ABOUTMENU
HELP
NEWS
GAS7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:54.7 nTPM
FANTOM5:284.6 Scaled Tags Per Million
Pig:42.7 nTPM
Mouse:26.1 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
2586 Male, age 75, left hemisphere 42.7
1830 Male, age 51, unknown 21.6
1870 Female, age 42, unknown 17.0
2828 Female, age 72, unknown 15.8
1827 Male, age 72, unknown 14.7
1833 Male, age 53, unknown 14.2
2666 Male, age 74, left hemisphere 10.9
2411 Female, age 72, unknown 9.6
2219 Male, age 76, both hemispheres 5.0
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 2.7
2750 Male, age 76, both hemispheres 13.7
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 0.9
1890 Male, age 53, unknown 2.8
2097 Female, age 72, unknown 1.1
1848 Female, age 42, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 14.5
1947 Male, age 18, unknown 43.6
1795 Male, age 51, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 2.6
2407 Male, age 75, both hemispheres 21.9
2825 Male, age 18, unknown 3.9
1815 Male, age 53, unknown 3.5
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 24.1
2584 Male, age 75, left hemisphere 52.4
1865 Male, age 51, unknown 38.5
1904 Male, age 53, unknown 36.4
2588 Male, age 74, left hemisphere 36.2
2823 Male, age 76, right hemisphere 28.2
2227 Male, age 72, unknown 24.0
2769 Male, age 72, unknown 23.6
1954 Female, age 42, unknown 19.2
2503 Female, age 72, unknown 17.3
1821 Female, age 72, unknown 7.1
2785 Male, age 18, unknown 3.5
2725 Female, age 75, unknown 2.2
Substantia nigra
nTPM: 7.5
2583 Male, age 75, right hemisphere 49.2
2590 Female, age 75, unknown 26.2
1851 Male, age 51, unknown 0.0
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2665 Male, age 74, both hemispheres 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 7.4
1913 Female, age 42, unknown 19.3
1995 Male, age 72, unknown 17.7
1796 Male, age 53, unknown 15.3
2664 Male, age 75, both hemispheres 9.6
2668 Female, age 75, unknown 5.7
2587 Male, age 74, left hemisphere 2.5
1839 Male, age 51, unknown 2.1
2261 Male, age 18, unknown 1.5
1895 Male, age 76, right hemisphere 0.0
2087 Female, age 72, unknown 0.0
Ventral tegmental area
nTPM: 6.1
2223 Female, age 72, unknown 36.7
2410 Female, age 72, unknown 0.4
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.7
Samples: 139

Max nTPM: 135.1
Min nTPM: 15.3
Std nTPM: 25.7
Median nTPM: 47.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 135.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 132.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 129.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 126.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 122.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 110.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 108.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 106.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 101.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 97.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 97.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 284.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 284.6
FF:10158-103A5 76 years, female 284.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.7
Pig sample Sample description nTPM
Midbrain
nTPM: 42.7
Samples: 4

Max nTPM: 54.0
Min nTPM: 22.7
Sample A Female 54.0
Sample B Female 22.7
Sample C Male 41.6
Sample D Male 52.5
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 23.3
Min nTPM: 18.6
Sample B Female 18.6
Sample C Male 21.2
Sample D Male 23.3
Substantia nigra
nTPM: 36.8
Samples: 4

Max nTPM: 53.8
Min nTPM: 29.4
Sample A Female 33.1
Sample B Female 29.4
Sample C Male 31.0
Sample D Male 53.8
Superior colliculi
nTPM: 30.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 15.4
Sample A Female 35.4
Sample B Female 15.4
Sample C Male 28.6
Sample D Male 41.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 28.5
Min nTPM: 25.1
Sample A Male 25.3
Sample B Male 25.3
Sample C Female 28.5
Sample D Female 25.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
69672808 Antisense, RP_050428_04_E06, Mouse strain C57BL/6J (56 days, male) 4.9
73992909 Antisense, RP_051214_01_F03, Mouse strain C57BL/6J (56 days, male) 3.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.