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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:63.5 nTPM
FANTOM5:139.2 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:77.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.4
1870 Female, age 42, unknown 56.0
1830 Male, age 51, unknown 50.4
2411 Female, age 72, unknown 49.9
2019 Male, age 18, unknown 49.8
1833 Male, age 53, unknown 47.1
2828 Female, age 72, unknown 40.1
2586 Male, age 75, left hemisphere 35.9
2666 Male, age 74, left hemisphere 35.6
1827 Male, age 72, unknown 35.0
2219 Male, age 76, both hemispheres 33.9
Dorsal raphe nucleus
nTPM: 40.8
2750 Male, age 76, both hemispheres 52.2
2016 Female, age 72, unknown 40.7
1828 Male, age 53, unknown 39.5
2298 Female, age 72, unknown 36.1
2047 Male, age 72, unknown 35.4
Inferior colliculus
nTPM: 36.9
1848 Female, age 42, unknown 38.3
1890 Male, age 53, unknown 38.1
2097 Female, age 72, unknown 36.7
2849 Male, age 72, unknown 34.7
Median raphe nucleus
nTPM: 40.4
2220 Male, age 76, midline 40.4
Pedunculopontine tegmental nucleus
nTPM: 41.8
2334 Male, age 80, both hemispheres 43.9
2338 Male, age 61, both hemispheres 41.9
1921 Female, age 85, both hemispheres 39.6
Periaquaductal grey, anterior
nTPM: 36.6
2502 Female, age 75, unknown 39.5
1947 Male, age 18, unknown 37.6
1795 Male, age 51, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 36.2
2850 Male, age 76, both hemispheres 38.8
2464 Female, age 72, unknown 38.3
1831 Male, age 72, unknown 35.9
1840 Male, age 53, unknown 31.8
Periaquaductal grey, lateral
nTPM: 37.4
2272 Male, age 74, both hemispheres 37.7
2140 Male, age 76, both hemispheres 37.5
2053 Male, age 18, unknown 37.1
Pretectal area
nTPM: 36.0
2273 Male, age 74, both hemispheres 41.1
1815 Male, age 53, unknown 39.5
2667 Female, age 75, unknown 38.5
2316 Male, age 76, right hemisphere 38.0
2825 Male, age 18, unknown 36.7
1817 Female, age 42, unknown 36.3
2224 Female, age 72, unknown 35.4
2407 Male, age 75, both hemispheres 34.8
2007 Male, age 72, unknown 34.4
1944 Female, age 72, unknown 31.7
1816 Male, age 51, unknown 29.9
Red nucleus
nTPM: 50.8
1821 Female, age 72, unknown 60.9
1865 Male, age 51, unknown 59.8
1904 Male, age 53, unknown 59.5
1954 Female, age 42, unknown 55.1
2227 Male, age 72, unknown 54.5
2769 Male, age 72, unknown 54.5
2823 Male, age 76, right hemisphere 51.5
2785 Male, age 18, unknown 48.3
2503 Female, age 72, unknown 46.9
2584 Male, age 75, left hemisphere 39.7
2725 Female, age 75, unknown 39.3
2588 Male, age 74, left hemisphere 39.0
Substantia nigra
nTPM: 38.9
2409 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 42.5
1889 Female, age 72, unknown 40.4
1851 Male, age 51, unknown 40.1
2583 Male, age 75, right hemisphere 39.6
2699 Male, age 18, unknown 39.3
2590 Female, age 75, unknown 39.2
1941 Male, age 53, unknown 37.2
1916 Female, age 42, unknown 34.7
2665 Male, age 74, both hemispheres 32.9
Superior colliculus
nTPM: 39.0
1913 Female, age 42, unknown 50.6
1995 Male, age 72, unknown 46.5
2587 Male, age 74, left hemisphere 42.3
2668 Female, age 75, unknown 39.4
1839 Male, age 51, unknown 39.1
1895 Male, age 76, right hemisphere 37.4
1796 Male, age 53, unknown 34.8
2087 Female, age 72, unknown 34.3
2664 Male, age 75, both hemispheres 33.3
2261 Male, age 18, unknown 32.1
Ventral tegmental area
nTPM: 43.4
2223 Female, age 72, unknown 57.6
2410 Female, age 72, unknown 44.3
1942 Male, age 51, unknown 41.7
2218 Male, age 76, both hemispheres 40.2
2021 Male, age 53, unknown 39.1
1915 Female, age 42, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.5
Samples: 139

Max nTPM: 153.8
Min nTPM: 22.1
Std nTPM: 25.4
Median nTPM: 57.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 153.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 152.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 149.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 143.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 137.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 128.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 122.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 120.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 118.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 115.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 110.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.2
FF:10158-103A5 76 years, female 139.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.3
Pig sample Sample description nTPM
Midbrain
nTPM: 59.4
Samples: 4

Max nTPM: 131.2
Min nTPM: 28.8
Sample A Female 131.2
Sample B Female 43.6
Sample C Male 33.8
Sample D Male 28.8
Periaqueductal gray
nTPM: 41.3
Samples: 3

Max nTPM: 44.1
Min nTPM: 38.2
Sample B Female 41.7
Sample C Male 38.2
Sample D Male 44.1
Substantia nigra
nTPM: 47.0
Samples: 4

Max nTPM: 61.2
Min nTPM: 36.6
Sample A Female 48.8
Sample B Female 36.6
Sample C Male 41.4
Sample D Male 61.2
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 26.7
Sample A Female 37.6
Sample B Female 26.7
Sample C Male 40.8
Sample D Male 41.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 79.4
Min nTPM: 75.2
Sample A Male 75.2
Sample B Male 77.2
Sample C Female 79.4
Sample D Female 79.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
69838712 Antisense, RP_050321_01_A10, Mouse strain C57BL/6J (56 days, male) 2.2
75233089 Antisense, RP_060220_02_G06, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.