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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:64.8 nTPM
FANTOM5:173.2 Scaled Tags Per Million
Pig:157.8 nTPM
Mouse:17.1 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
2586 Male, age 75, left hemisphere 96.7
2828 Female, age 72, unknown 70.6
2666 Male, age 74, left hemisphere 46.3
2219 Male, age 76, both hemispheres 41.9
1830 Male, age 51, unknown 41.4
1870 Female, age 42, unknown 35.5
1833 Male, age 53, unknown 30.2
2019 Male, age 18, unknown 18.7
1827 Male, age 72, unknown 13.9
2411 Female, age 72, unknown 12.5
Dorsal raphe nucleus
nTPM: 19.0
2016 Female, age 72, unknown 54.1
1828 Male, age 53, unknown 21.2
2750 Male, age 76, both hemispheres 14.3
2047 Male, age 72, unknown 5.5
2298 Female, age 72, unknown 0.1
Inferior colliculus
nTPM: 14.1
2849 Male, age 72, unknown 35.5
1848 Female, age 42, unknown 17.8
1890 Male, age 53, unknown 2.9
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 1.1
1921 Female, age 85, both hemispheres 2.6
2334 Male, age 80, both hemispheres 0.7
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 23.7
2502 Female, age 75, unknown 40.9
1795 Male, age 51, unknown 21.1
1947 Male, age 18, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 14.5
2850 Male, age 76, both hemispheres 18.1
2464 Female, age 72, unknown 15.2
1840 Male, age 53, unknown 13.1
1831 Male, age 72, unknown 11.5
Periaquaductal grey, lateral
nTPM: 23.6
2053 Male, age 18, unknown 34.0
2272 Male, age 74, both hemispheres 32.1
2140 Male, age 76, both hemispheres 4.8
Pretectal area
nTPM: 16.5
2407 Male, age 75, both hemispheres 47.7
2825 Male, age 18, unknown 37.1
2273 Male, age 74, both hemispheres 33.8
2667 Female, age 75, unknown 19.0
2316 Male, age 76, right hemisphere 17.5
1815 Male, age 53, unknown 16.5
2224 Female, age 72, unknown 8.3
1817 Female, age 42, unknown 1.6
1816 Male, age 51, unknown 0.0
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
Red nucleus
nTPM: 45.1
2769 Male, age 72, unknown 62.7
2227 Male, age 72, unknown 61.3
1865 Male, age 51, unknown 57.3
2584 Male, age 75, left hemisphere 50.8
2503 Female, age 72, unknown 49.8
2588 Male, age 74, left hemisphere 47.3
1904 Male, age 53, unknown 45.4
2823 Male, age 76, right hemisphere 43.2
2785 Male, age 18, unknown 37.7
1954 Female, age 42, unknown 34.4
1821 Female, age 72, unknown 33.4
2725 Female, age 75, unknown 18.2
Substantia nigra
nTPM: 18.1
2699 Male, age 18, unknown 60.3
2583 Male, age 75, right hemisphere 51.8
1851 Male, age 51, unknown 19.9
2590 Female, age 75, unknown 19.9
1941 Male, age 53, unknown 15.8
2665 Male, age 74, both hemispheres 13.7
2409 Female, age 72, unknown 0.1
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
2241 Male, age 72, unknown 0.0
Superior colliculus
nTPM: 36.0
1995 Male, age 72, unknown 90.9
2664 Male, age 75, both hemispheres 77.1
1913 Female, age 42, unknown 71.4
1839 Male, age 51, unknown 38.7
2587 Male, age 74, left hemisphere 32.8
2668 Female, age 75, unknown 24.9
1796 Male, age 53, unknown 22.0
1895 Male, age 76, right hemisphere 1.8
2087 Female, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
Ventral tegmental area
nTPM: 14.8
2223 Female, age 72, unknown 31.9
2021 Male, age 53, unknown 20.0
1942 Male, age 51, unknown 14.9
1915 Female, age 42, unknown 11.6
2410 Female, age 72, unknown 10.8
2218 Male, age 76, both hemispheres 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.8
Samples: 139

Max nTPM: 126.9
Min nTPM: 20.4
Std nTPM: 19.6
Median nTPM: 62.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 126.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 119.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 111.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 111.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 100.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 98.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 97.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 97.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 95.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 93.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 93.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.2
FF:10158-103A5 76 years, female 173.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 157.8
Pig sample Sample description nTPM
Midbrain
nTPM: 157.8
Samples: 4

Max nTPM: 298.5
Min nTPM: 95.0
Sample A Female 298.5
Sample B Female 126.7
Sample C Male 111.0
Sample D Male 95.0
Periaqueductal gray
nTPM: 123.9
Samples: 3

Max nTPM: 125.0
Min nTPM: 123.2
Sample B Female 123.5
Sample C Male 125.0
Sample D Male 123.2
Substantia nigra
nTPM: 153.5
Samples: 4

Max nTPM: 207.3
Min nTPM: 124.6
Sample A Female 136.8
Sample B Female 124.6
Sample C Male 145.2
Sample D Male 207.3
Superior colliculi
nTPM: 123.0
Samples: 4

Max nTPM: 145.5
Min nTPM: 89.3
Sample A Female 131.2
Sample B Female 89.3
Sample C Male 125.8
Sample D Male 145.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.9
Sample A Male 18.6
Sample B Male 18.4
Sample C Female 13.9
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
77620379 Antisense, RP_070205_01_D12, Mouse strain C57BL/6J (56 days, male) 1.8
2424 Antisense, RP_Baylor_102930, Mouse strain C57BL/6J (56 days, male) 1.5
77413698 Antisense, RP_070205_01_D12, Mouse strain C57BL/6J (56 days, male) 1.1
2423 Antisense, RP_Baylor_102930, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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