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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:26.2 nTPM
FANTOM5:7.3 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
2019 Male, age 18, unknown 21.0
2666 Male, age 74, left hemisphere 20.4
2828 Female, age 72, unknown 20.2
1830 Male, age 51, unknown 19.4
1833 Male, age 53, unknown 19.3
1870 Female, age 42, unknown 19.1
2411 Female, age 72, unknown 18.9
1827 Male, age 72, unknown 18.2
2219 Male, age 76, both hemispheres 17.6
2586 Male, age 75, left hemisphere 16.9
Dorsal raphe nucleus
nTPM: 19.1
2750 Male, age 76, both hemispheres 20.6
1828 Male, age 53, unknown 19.9
2016 Female, age 72, unknown 19.0
2047 Male, age 72, unknown 18.2
2298 Female, age 72, unknown 17.9
Inferior colliculus
nTPM: 19.0
2097 Female, age 72, unknown 19.4
1890 Male, age 53, unknown 19.3
2849 Male, age 72, unknown 19.1
1848 Female, age 42, unknown 18.2
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Pedunculopontine tegmental nucleus
nTPM: 20.3
2338 Male, age 61, both hemispheres 21.9
2334 Male, age 80, both hemispheres 20.7
1921 Female, age 85, both hemispheres 18.2
Periaquaductal grey, anterior
nTPM: 18.9
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 18.7
1947 Male, age 18, unknown 17.9
Periaquaductal grey, dorsal
nTPM: 18.3
1831 Male, age 72, unknown 19.0
2464 Female, age 72, unknown 19.0
2850 Male, age 76, both hemispheres 17.9
1840 Male, age 53, unknown 17.3
Periaquaductal grey, lateral
nTPM: 18.7
2272 Male, age 74, both hemispheres 19.7
2053 Male, age 18, unknown 18.7
2140 Male, age 76, both hemispheres 17.7
Pretectal area
nTPM: 18.3
2667 Female, age 75, unknown 19.4
1817 Female, age 42, unknown 19.1
1944 Female, age 72, unknown 19.1
2825 Male, age 18, unknown 19.1
2007 Male, age 72, unknown 18.8
1815 Male, age 53, unknown 18.2
2224 Female, age 72, unknown 18.0
1816 Male, age 51, unknown 17.9
2316 Male, age 76, right hemisphere 17.7
2273 Male, age 74, both hemispheres 17.5
2407 Male, age 75, both hemispheres 16.7
Red nucleus
nTPM: 20.4
2823 Male, age 76, right hemisphere 22.7
2227 Male, age 72, unknown 21.4
2503 Female, age 72, unknown 21.1
1821 Female, age 72, unknown 21.0
1904 Male, age 53, unknown 21.0
2769 Male, age 72, unknown 21.0
1954 Female, age 42, unknown 20.3
2785 Male, age 18, unknown 19.6
2588 Male, age 74, left hemisphere 19.5
1865 Male, age 51, unknown 19.3
2725 Female, age 75, unknown 19.2
2584 Male, age 75, left hemisphere 18.6
Substantia nigra
nTPM: 18.9
2665 Male, age 74, both hemispheres 21.3
1916 Female, age 42, unknown 19.9
1851 Male, age 51, unknown 19.3
2409 Female, age 72, unknown 19.3
2699 Male, age 18, unknown 19.1
1941 Male, age 53, unknown 18.6
1889 Female, age 72, unknown 18.3
2241 Male, age 72, unknown 18.1
2583 Male, age 75, right hemisphere 17.5
2590 Female, age 75, unknown 17.5
Superior colliculus
nTPM: 18.6
1895 Male, age 76, right hemisphere 19.9
2587 Male, age 74, left hemisphere 19.7
1839 Male, age 51, unknown 19.3
2087 Female, age 72, unknown 19.2
1913 Female, age 42, unknown 18.8
2668 Female, age 75, unknown 18.7
1796 Male, age 53, unknown 18.4
1995 Male, age 72, unknown 18.1
2261 Male, age 18, unknown 17.4
2664 Male, age 75, both hemispheres 16.4
Ventral tegmental area
nTPM: 19.3
2218 Male, age 76, both hemispheres 20.5
1915 Female, age 42, unknown 19.9
1942 Male, age 51, unknown 19.0
2223 Female, age 72, unknown 18.9
2021 Male, age 53, unknown 18.8
2410 Female, age 72, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 144.2
Min nTPM: 2.7
Std nTPM: 24.3
Median nTPM: 19.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 144.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 118.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 108.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 100.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 93.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 91.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 86.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 85.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 75.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 67.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.3
FF:10158-103A5 76 years, female 7.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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