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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.7 nTPM
HPA:97.7 nTPM
GTEx:108.9 nTPM
FANTOM5:162.7 Scaled Tags Per Million
Pig:112.4 nTPM
Mouse:121.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.0
2666 Male, age 74, left hemisphere 92.5
1870 Female, age 42, unknown 91.2
1833 Male, age 53, unknown 89.8
2219 Male, age 76, both hemispheres 88.9
1827 Male, age 72, unknown 86.4
2411 Female, age 72, unknown 85.7
1830 Male, age 51, unknown 84.3
2019 Male, age 18, unknown 82.4
2828 Female, age 72, unknown 80.2
2586 Male, age 75, left hemisphere 69.1
Dorsal raphe nucleus
nTPM: 83.4
2750 Male, age 76, both hemispheres 86.8
1828 Male, age 53, unknown 86.7
2016 Female, age 72, unknown 84.1
2047 Male, age 72, unknown 80.4
2298 Female, age 72, unknown 79.2
Inferior colliculus
nTPM: 83.8
2849 Male, age 72, unknown 96.9
1848 Female, age 42, unknown 82.5
1890 Male, age 53, unknown 80.1
2097 Female, age 72, unknown 75.9
Median raphe nucleus
nTPM: 97.7
2220 Male, age 76, midline 97.7
Pedunculopontine tegmental nucleus
nTPM: 90.7
2334 Male, age 80, both hemispheres 97.6
2338 Male, age 61, both hemispheres 89.3
1921 Female, age 85, both hemispheres 85.4
Periaquaductal grey, anterior
nTPM: 80.2
1947 Male, age 18, unknown 83.5
2502 Female, age 75, unknown 80.0
1795 Male, age 51, unknown 77.0
Periaquaductal grey, dorsal
nTPM: 87.3
2850 Male, age 76, both hemispheres 92.8
1840 Male, age 53, unknown 86.7
2464 Female, age 72, unknown 85.0
1831 Male, age 72, unknown 84.7
Periaquaductal grey, lateral
nTPM: 78.9
2140 Male, age 76, both hemispheres 83.4
2053 Male, age 18, unknown 80.0
2272 Male, age 74, both hemispheres 73.5
Pretectal area
nTPM: 84.4
1817 Female, age 42, unknown 90.6
1815 Male, age 53, unknown 87.7
2224 Female, age 72, unknown 86.5
1944 Female, age 72, unknown 86.4
1816 Male, age 51, unknown 85.8
2667 Female, age 75, unknown 85.5
2825 Male, age 18, unknown 84.8
2007 Male, age 72, unknown 83.1
2407 Male, age 75, both hemispheres 80.5
2273 Male, age 74, both hemispheres 78.7
2316 Male, age 76, right hemisphere 78.3
Red nucleus
nTPM: 88.6
2725 Female, age 75, unknown 104.5
2503 Female, age 72, unknown 103.6
1821 Female, age 72, unknown 96.8
1865 Male, age 51, unknown 88.5
2588 Male, age 74, left hemisphere 88.4
1954 Female, age 42, unknown 87.5
2227 Male, age 72, unknown 86.9
2823 Male, age 76, right hemisphere 86.9
1904 Male, age 53, unknown 83.4
2769 Male, age 72, unknown 82.9
2785 Male, age 18, unknown 77.4
2584 Male, age 75, left hemisphere 76.7
Substantia nigra
nTPM: 89.6
2699 Male, age 18, unknown 108.0
1916 Female, age 42, unknown 98.3
1851 Male, age 51, unknown 92.3
1941 Male, age 53, unknown 91.3
1889 Female, age 72, unknown 88.4
2409 Female, age 72, unknown 88.2
2665 Male, age 74, both hemispheres 88.2
2241 Male, age 72, unknown 85.3
2590 Female, age 75, unknown 78.2
2583 Male, age 75, right hemisphere 77.8
Superior colliculus
nTPM: 81.3
2587 Male, age 74, left hemisphere 89.1
1913 Female, age 42, unknown 86.4
1839 Male, age 51, unknown 85.8
1895 Male, age 76, right hemisphere 85.4
1995 Male, age 72, unknown 83.0
1796 Male, age 53, unknown 79.2
2087 Female, age 72, unknown 78.4
2668 Female, age 75, unknown 77.7
2261 Male, age 18, unknown 74.7
2664 Male, age 75, both hemispheres 73.5
Ventral tegmental area
nTPM: 89.3
2218 Male, age 76, both hemispheres 96.1
2223 Female, age 72, unknown 92.3
1915 Female, age 42, unknown 91.5
2410 Female, age 72, unknown 87.2
2021 Male, age 53, unknown 85.7
1942 Male, age 51, unknown 82.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.9
Samples: 139

Max nTPM: 209.1
Min nTPM: 55.2
Std nTPM: 24.8
Median nTPM: 105.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 209.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 169.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 163.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 163.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 163.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 160.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 153.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 153.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 152.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 148.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 148.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.7
FF:10158-103A5 76 years, female 162.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.4
Pig sample Sample description nTPM
Midbrain
nTPM: 112.4
Samples: 4

Max nTPM: 174.5
Min nTPM: 81.9
Sample A Female 174.5
Sample B Female 91.8
Sample C Male 101.3
Sample D Male 81.9
Periaqueductal gray
nTPM: 87.7
Samples: 3

Max nTPM: 96.8
Min nTPM: 75.5
Sample B Female 75.5
Sample C Male 96.8
Sample D Male 90.8
Substantia nigra
nTPM: 105.4
Samples: 4

Max nTPM: 122.3
Min nTPM: 91.5
Sample A Female 122.3
Sample B Female 91.5
Sample C Male 114.6
Sample D Male 93.3
Superior colliculi
nTPM: 99.4
Samples: 4

Max nTPM: 109.5
Min nTPM: 76.3
Sample A Female 107.0
Sample B Female 76.3
Sample C Male 104.6
Sample D Male 109.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.0
Samples: 4

Max nTPM: 128.8
Min nTPM: 111.8
Sample A Male 111.8
Sample B Male 121.9
Sample C Female 128.8
Sample D Female 121.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.