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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:2.6 nTPM
HPA:2.6 nTPM
GTEx:2.8 nTPM
FANTOM5:5.8 Scaled Tags Per Million
Pig:1.3 nTPM
Mouse:0.2 nTPM

CAUDATE - Antibody stainingi
Antibody CAB022710
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.0
2288 Male, age 75, left hemisphere 1.9
2289 Male, age 61, right hemisphere 1.6
1781 Male, age 74, unknown 1.4
2290 Female, age 72, unknown 0.7
2481 Female, age 94, left hemisphere 0.7
2846 Female, age 79, unknown 0.7
1854 Male, age 80, left hemisphere 0.6
1857 Female, age 85, left hemisphere 0.4
Claustrum
nTPM: 2.6
2292 Female, age 85, both hemispheres 4.2
2198 Male, age 80, both hemispheres 3.1
1956 Male, age 74, unknown 2.9
2645 Female, age 72, unknown 2.9
2284 Female, age 91, both hemispheres 2.2
2568 Male, age 61, both hemispheres 2.2
2196 Female, age 79, unknown 2.1
2491 Male, age 75, both hemispheres 1.8
2392 Female, age 94, both hemispheres 1.6
Globus pallidus, externus
nTPM: 2.3
2567 Female, age 72, unknown 4.3
2646 Male, age 61, right hemisphere 2.1
2395 Male, age 75, both hemispheres 2.0
2772 Female, age 79, unknown 2.0
1996 Male, age 80, right hemisphere 1.2
Globus pallidus, internus
nTPM: 2.5
2111 Female, age 85, right hemisphere 5.3
2566 Female, age 72, unknown 3.9
1818 Male, age 74, unknown 2.1
2778 Female, age 91, both hemispheres 1.8
2037 Male, age 80, right hemisphere 1.7
2287 Male, age 75, right hemisphere 1.5
2483 Female, age 94, right hemisphere 1.1
Nucleus accumbens
nTPM: 2.1
1783 Male, age 74, unknown 2.8
2732 Male, age 80, right hemisphere 2.8
2824 Male, age 61, right hemisphere 2.8
1856 Female, age 91, right hemisphere 2.5
2698 Female, age 72, unknown 1.7
2286 Male, age 75, left hemisphere 1.5
2391 Female, age 94, left hemisphere 1.5
1806 Female, age 85, left hemisphere 1.1
Nucleus basalis of Meynert
nTPM: 1.4
2821 Male, age 75, both hemispheres 2.1
2569 Male, age 61, both hemispheres 1.3
2393 Male, age 80, right hemisphere 1.1
2484 Female, age 94, left hemisphere 1.0
Nucleus of the diagonal band
nTPM: 1.0
2029 Male, age 61, right hemisphere 1.8
1979 Male, age 74, unknown 1.2
1812 Female, age 91, both hemispheres 0.8
2775 Male, age 80, right hemisphere 0.6
2195 Female, age 85, both hemispheres 0.3
Olfactory tubercle
nTPM: 0.9
2487 Female, age 94, left hemisphere 1.1
2856 Male, age 75, right hemisphere 1.0
1998 Female, age 91, both hemispheres 0.9
1846 Male, age 80, right hemisphere 0.5
Putamen
nTPM: 1.4
1829 Male, age 74, unknown 1.8
2489 Female, age 72, unknown 1.8
2647 Male, age 75, left hemisphere 1.7
2466 Female, age 79, unknown 1.4
1838 Male, age 80, right hemisphere 1.0
1937 Female, age 91, right hemisphere 1.0
2482 Female, age 94, left hemisphere 0.9
Septal nuclei
nTPM: 1.1
2394 Male, age 61, left hemisphere 1.8
2009 Female, age 91, both hemispheres 1.5
2059 Female, age 85, both hemispheres 1.3
2199 Male, age 80, right hemisphere 1.2
2031 Female, age 72, unknown 0.7
2629 Female, age 94, right hemisphere 0.7
1960 Male, age 74, unknown 0.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.3
Samples: 246

Max nTPM: 18.1
Min nTPM: 0.0
Std nTPM: 1.5
Median nTPM: 0.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 18.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 10.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 6.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 5.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 5.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 4.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 4.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 4.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 3.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.8
Samples: 246

Max nTPM: 22.9
Min nTPM: 0.0
Std nTPM: 2.4
Median nTPM: 2.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 22.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 13.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 11.3
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 10.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 10.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 9.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 8.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 8.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 7.9
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 7.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 7.5
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Brain - Putamen (basal ganglia)
Average nTPM: 1.7
Samples: 205

Max nTPM: 9.2
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 1.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 9.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 5.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 5.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 5.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 4.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 4.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 4.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 4.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 4.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 4.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 4.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.7
FF:10164-103B2 76 years, female 1.7
Globus pallidus
Scaled Tags Per Million: 5.8
FF:10161-103A8 76 years, female 7.0
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 2.1
FF:10037-101F1 23-56 years, mixed 2.1
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.3
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.6
Sample C Male 1.0
Sample D Male 0.6
Putamen
nTPM: 1.3
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 1.3
Sample C Male 2.9
Sample D Male 0.8
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.7
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 0.2
Sample C Female 0.3
Sample D Female 0.3
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.1
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.5
Sample C Female 0.1
Sample D Female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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