ABOUTMENU
HELP
NEWS
CALCOCO1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:92.7 nTPM
HPA:92.7 nTPM
GTEx:88.4 nTPM
FANTOM5:93.0 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:63.4 nTPM
Allen mouse:16.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038313Antibody HPA038314
Glial cells MediumNot detected
Neuronal cells HighNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 91.7
2290 Female, age 72, unknown 95.3
2846 Female, age 79, unknown 95.0
2289 Male, age 61, right hemisphere 93.1
1854 Male, age 80, left hemisphere 92.9
1857 Female, age 85, left hemisphere 92.7
2288 Male, age 75, left hemisphere 91.0
1781 Male, age 74, unknown 89.9
2481 Female, age 94, left hemisphere 83.5
Claustrum
nTPM: 83.5
2284 Female, age 91, both hemispheres 86.7
2568 Male, age 61, both hemispheres 86.3
1956 Male, age 74, unknown 83.9
2392 Female, age 94, both hemispheres 83.7
2645 Female, age 72, unknown 83.3
2491 Male, age 75, both hemispheres 82.4
2292 Female, age 85, both hemispheres 81.9
2196 Female, age 79, unknown 81.7
2198 Male, age 80, both hemispheres 81.6
Globus pallidus, externus
nTPM: 84.3
2646 Male, age 61, right hemisphere 87.7
2567 Female, age 72, unknown 84.3
2395 Male, age 75, both hemispheres 83.6
1996 Male, age 80, right hemisphere 83.5
2772 Female, age 79, unknown 82.3
Globus pallidus, internus
nTPM: 86.8
1818 Male, age 74, unknown 88.8
2778 Female, age 91, both hemispheres 88.5
2111 Female, age 85, right hemisphere 88.1
2566 Female, age 72, unknown 87.0
2287 Male, age 75, right hemisphere 85.9
2483 Female, age 94, right hemisphere 85.0
2037 Male, age 80, right hemisphere 84.4
Nucleus accumbens
nTPM: 92.7
2824 Male, age 61, right hemisphere 104.7
1783 Male, age 74, unknown 98.1
1856 Female, age 91, right hemisphere 97.0
2698 Female, age 72, unknown 92.4
1806 Female, age 85, left hemisphere 91.0
2286 Male, age 75, left hemisphere 88.5
2391 Female, age 94, left hemisphere 88.5
2732 Male, age 80, right hemisphere 81.4
Nucleus basalis of Meynert
nTPM: 87.4
2393 Male, age 80, right hemisphere 91.5
2569 Male, age 61, both hemispheres 87.4
2484 Female, age 94, left hemisphere 86.6
2821 Male, age 75, both hemispheres 84.0
Nucleus of the diagonal band
nTPM: 81.4
2029 Male, age 61, right hemisphere 86.4
2775 Male, age 80, right hemisphere 81.0
1812 Female, age 91, both hemispheres 80.6
2195 Female, age 85, both hemispheres 79.6
1979 Male, age 74, unknown 79.1
Olfactory tubercle
nTPM: 81.8
2856 Male, age 75, right hemisphere 83.4
1998 Female, age 91, both hemispheres 82.5
1846 Male, age 80, right hemisphere 80.6
2487 Female, age 94, left hemisphere 80.5
Putamen
nTPM: 91.6
1838 Male, age 80, right hemisphere 102.9
1937 Female, age 91, right hemisphere 96.6
1829 Male, age 74, unknown 94.5
2466 Female, age 79, unknown 92.3
2489 Female, age 72, unknown 87.1
2482 Female, age 94, left hemisphere 85.0
2647 Male, age 75, left hemisphere 83.1
Septal nuclei
nTPM: 80.8
2394 Male, age 61, left hemisphere 83.1
2629 Female, age 94, right hemisphere 82.9
1960 Male, age 74, unknown 81.0
2031 Female, age 72, unknown 80.4
2059 Female, age 85, both hemispheres 79.9
2009 Female, age 91, both hemispheres 79.8
2199 Male, age 80, right hemisphere 78.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 88.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 83.2
Samples: 246

Max nTPM: 133.3
Min nTPM: 46.1
Std nTPM: 16.1
Median nTPM: 80.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 133.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 127.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 126.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 126.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 125.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 121.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 120.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 116.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 116.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 115.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 115.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 88.4
Samples: 246

Max nTPM: 152.6
Min nTPM: 33.7
Std nTPM: 20.8
Median nTPM: 89.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 152.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 137.0
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 134.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 131.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 128.5
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 126.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 125.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 125.1
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 124.7
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 124.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 122.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 82.0
Samples: 205

Max nTPM: 142.1
Min nTPM: 41.4
Std nTPM: 17.2
Median nTPM: 81.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 142.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 124.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 121.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 118.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 118.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 115.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 114.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 114.3
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 113.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 112.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 112.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.0
FF:10164-103B2 76 years, female 82.0
Globus pallidus
Scaled Tags Per Million: 54.3
FF:10161-103A8 76 years, female 78.7
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 52.8
FF:10037-101F1 23-56 years, mixed 52.8
Putamen
Scaled Tags Per Million: 93.0
FF:10176-103C5 60 years, female 93.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 66.8
Pig sample Sample description nTPM
Caudate
nTPM: 61.4
Samples: 4

Max nTPM: 76.5
Min nTPM: 50.1
Sample A Female 50.1
Sample B Female 62.9
Sample C Male 76.5
Sample D Male 56.1
Putamen
nTPM: 66.8
Samples: 4

Max nTPM: 83.3
Min nTPM: 48.0
Sample A Female 48.0
Sample B Female 57.6
Sample C Male 78.1
Sample D Male 83.3
Septum
nTPM: 39.0
Samples: 4

Max nTPM: 43.3
Min nTPM: 36.3
Sample A Female 43.3
Sample B Female 39.2
Sample C Male 36.3
Sample D Male 37.2
Ventral pallidum
nTPM: 50.0
Samples: 4

Max nTPM: 58.7
Min nTPM: 45.8
Sample A Female 48.7
Sample B Female 45.8
Sample C Male 46.9
Sample D Male 58.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 63.5
Samples: 4

Max nTPM: 75.3
Min nTPM: 51.4
Sample A Male 73.3
Sample B Male 75.3
Sample C Female 51.4
Sample D Female 53.8
Septum
nTPM: 37.8
Samples: 4

Max nTPM: 40.2
Min nTPM: 35.5
Sample A Male 39.4
Sample B Male 35.5
Sample C Female 36.2
Sample D Female 40.2
Ventral forebrain
nTPM: 42.5
Samples: 4

Max nTPM: 46.8
Min nTPM: 38.8
Sample A Male 46.8
Sample B Male 43.1
Sample C Female 38.8
Sample D Female 41.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.6
69407086 Antisense, RP_050412_02_H02, Mouse strain C57BL/6J (56 days, male) 16.6
Pallidum
Expression energy: 13.2
69407086 Antisense, RP_050412_02_H02, Mouse strain C57BL/6J (56 days, male) 13.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.