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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.4 nTPM
HPA:81.4 nTPM
GTEx:59.9 nTPM
FANTOM5:59.1 Scaled Tags Per Million
Pig:51.2 nTPM
Mouse:32.1 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.4
2666 Male, age 74, left hemisphere 83.9
1833 Male, age 53, unknown 83.6
1830 Male, age 51, unknown 82.0
2219 Male, age 76, both hemispheres 81.8
2019 Male, age 18, unknown 81.5
2828 Female, age 72, unknown 81.2
1870 Female, age 42, unknown 80.6
2411 Female, age 72, unknown 80.3
1827 Male, age 72, unknown 79.9
2586 Male, age 75, left hemisphere 78.9
Dorsal raphe nucleus
nTPM: 79.5
2750 Male, age 76, both hemispheres 80.9
2047 Male, age 72, unknown 79.7
1828 Male, age 53, unknown 79.6
2016 Female, age 72, unknown 78.8
2298 Female, age 72, unknown 78.6
Inferior colliculus
nTPM: 80.1
2849 Male, age 72, unknown 82.7
1848 Female, age 42, unknown 81.2
2097 Female, age 72, unknown 78.4
1890 Male, age 53, unknown 78.0
Median raphe nucleus
nTPM: 80.2
2220 Male, age 76, midline 80.2
Pedunculopontine tegmental nucleus
nTPM: 81.3
2338 Male, age 61, both hemispheres 81.9
2334 Male, age 80, both hemispheres 81.6
1921 Female, age 85, both hemispheres 80.5
Periaquaductal grey, anterior
nTPM: 80.3
2502 Female, age 75, unknown 82.8
1947 Male, age 18, unknown 79.8
1795 Male, age 51, unknown 78.4
Periaquaductal grey, dorsal
nTPM: 79.1
2464 Female, age 72, unknown 81.2
2850 Male, age 76, both hemispheres 80.8
1831 Male, age 72, unknown 78.3
1840 Male, age 53, unknown 76.3
Periaquaductal grey, lateral
nTPM: 80.3
2140 Male, age 76, both hemispheres 81.1
2272 Male, age 74, both hemispheres 80.8
2053 Male, age 18, unknown 79.0
Pretectal area
nTPM: 80.5
2667 Female, age 75, unknown 82.5
2825 Male, age 18, unknown 82.5
1815 Male, age 53, unknown 82.0
2407 Male, age 75, both hemispheres 81.8
1817 Female, age 42, unknown 80.8
1816 Male, age 51, unknown 80.4
2224 Female, age 72, unknown 80.4
2007 Male, age 72, unknown 80.0
2273 Male, age 74, both hemispheres 80.0
1944 Female, age 72, unknown 78.1
2316 Male, age 76, right hemisphere 77.1
Red nucleus
nTPM: 81.1
2588 Male, age 74, left hemisphere 83.5
1821 Female, age 72, unknown 82.9
1954 Female, age 42, unknown 82.1
2785 Male, age 18, unknown 81.3
2227 Male, age 72, unknown 81.2
2823 Male, age 76, right hemisphere 81.2
2769 Male, age 72, unknown 81.1
1865 Male, age 51, unknown 81.0
1904 Male, age 53, unknown 80.6
2503 Female, age 72, unknown 80.1
2584 Male, age 75, left hemisphere 80.1
2725 Female, age 75, unknown 78.0
Substantia nigra
nTPM: 79.1
2699 Male, age 18, unknown 81.5
2583 Male, age 75, right hemisphere 80.8
1941 Male, age 53, unknown 80.6
2409 Female, age 72, unknown 80.4
1851 Male, age 51, unknown 79.0
2590 Female, age 75, unknown 79.0
2241 Male, age 72, unknown 78.7
1889 Female, age 72, unknown 77.9
2665 Male, age 74, both hemispheres 77.5
1916 Female, age 42, unknown 75.6
Superior colliculus
nTPM: 80.3
1895 Male, age 76, right hemisphere 81.9
1839 Male, age 51, unknown 81.8
1913 Female, age 42, unknown 81.5
1796 Male, age 53, unknown 81.1
2664 Male, age 75, both hemispheres 80.6
1995 Male, age 72, unknown 80.5
2587 Male, age 74, left hemisphere 79.9
2668 Female, age 75, unknown 79.1
2087 Female, age 72, unknown 79.0
2261 Male, age 18, unknown 77.5
Ventral tegmental area
nTPM: 79.0
2410 Female, age 72, unknown 80.9
1942 Male, age 51, unknown 78.9
2223 Female, age 72, unknown 78.8
1915 Female, age 42, unknown 78.7
2021 Male, age 53, unknown 78.5
2218 Male, age 76, both hemispheres 78.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.9
Samples: 139

Max nTPM: 112.5
Min nTPM: 26.0
Std nTPM: 10.6
Median nTPM: 59.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 112.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 95.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 86.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 84.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 84.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 80.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 78.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 78.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 75.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.1
FF:10158-103A5 76 years, female 59.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.2
Pig sample Sample description nTPM
Midbrain
nTPM: 46.2
Samples: 4

Max nTPM: 59.6
Min nTPM: 41.3
Sample A Female 59.6
Sample B Female 41.3
Sample C Male 41.3
Sample D Male 42.5
Periaqueductal gray
nTPM: 38.1
Samples: 3

Max nTPM: 39.4
Min nTPM: 36.7
Sample B Female 39.4
Sample C Male 38.2
Sample D Male 36.7
Substantia nigra
nTPM: 45.8
Samples: 4

Max nTPM: 52.0
Min nTPM: 38.9
Sample A Female 45.4
Sample B Female 38.9
Sample C Male 46.7
Sample D Male 52.0
Superior colliculi
nTPM: 51.2
Samples: 4

Max nTPM: 61.6
Min nTPM: 39.6
Sample A Female 54.5
Sample B Female 61.6
Sample C Male 39.6
Sample D Male 49.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 32.8
Min nTPM: 31.0
Sample A Male 32.8
Sample B Male 31.0
Sample C Female 32.1
Sample D Female 32.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
69407086 Antisense, RP_050412_02_H02, Mouse strain C57BL/6J (56 days, male) 13.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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