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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA:36.4 nTPM
GTEx:30.9 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:4.3 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.5
1830 Male, age 51, unknown 35.0
1833 Male, age 53, unknown 33.6
2019 Male, age 18, unknown 33.6
1870 Female, age 42, unknown 33.5
2586 Male, age 75, left hemisphere 31.9
2411 Female, age 72, unknown 29.9
2828 Female, age 72, unknown 29.8
2666 Male, age 74, left hemisphere 28.3
1827 Male, age 72, unknown 25.5
2219 Male, age 76, both hemispheres 24.5
Dorsal raphe nucleus
nTPM: 28.4
2750 Male, age 76, both hemispheres 32.1
2047 Male, age 72, unknown 28.6
1828 Male, age 53, unknown 28.3
2016 Female, age 72, unknown 26.9
2298 Female, age 72, unknown 26.3
Inferior colliculus
nTPM: 25.7
1848 Female, age 42, unknown 26.6
2849 Male, age 72, unknown 26.6
1890 Male, age 53, unknown 25.4
2097 Female, age 72, unknown 24.3
Median raphe nucleus
nTPM: 27.7
2220 Male, age 76, midline 27.7
Pedunculopontine tegmental nucleus
nTPM: 31.2
2338 Male, age 61, both hemispheres 42.9
2334 Male, age 80, both hemispheres 27.9
1921 Female, age 85, both hemispheres 22.8
Periaquaductal grey, anterior
nTPM: 27.4
2502 Female, age 75, unknown 28.3
1947 Male, age 18, unknown 28.2
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 25.8
2850 Male, age 76, both hemispheres 29.4
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 25.8
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 28.5
2140 Male, age 76, both hemispheres 29.2
2272 Male, age 74, both hemispheres 29.2
2053 Male, age 18, unknown 27.3
Pretectal area
nTPM: 26.4
1817 Female, age 42, unknown 29.2
2316 Male, age 76, right hemisphere 28.2
2407 Male, age 75, both hemispheres 27.9
2273 Male, age 74, both hemispheres 27.6
1815 Male, age 53, unknown 27.2
2667 Female, age 75, unknown 26.7
2825 Male, age 18, unknown 26.5
2007 Male, age 72, unknown 25.3
2224 Female, age 72, unknown 24.9
1944 Female, age 72, unknown 24.7
1816 Male, age 51, unknown 21.7
Red nucleus
nTPM: 36.4
1865 Male, age 51, unknown 43.1
1904 Male, age 53, unknown 42.6
1954 Female, age 42, unknown 39.5
2769 Male, age 72, unknown 39.4
2227 Male, age 72, unknown 38.0
2823 Male, age 76, right hemisphere 37.6
2785 Male, age 18, unknown 34.9
2503 Female, age 72, unknown 34.4
1821 Female, age 72, unknown 33.8
2588 Male, age 74, left hemisphere 33.4
2725 Female, age 75, unknown 30.5
2584 Male, age 75, left hemisphere 30.0
Substantia nigra
nTPM: 29.6
2409 Female, age 72, unknown 36.7
1851 Male, age 51, unknown 32.2
2699 Male, age 18, unknown 31.6
2590 Female, age 75, unknown 31.1
2583 Male, age 75, right hemisphere 29.9
2665 Male, age 74, both hemispheres 29.4
1941 Male, age 53, unknown 27.0
1889 Female, age 72, unknown 26.9
1916 Female, age 42, unknown 26.1
2241 Male, age 72, unknown 24.7
Superior colliculus
nTPM: 27.7
1995 Male, age 72, unknown 34.4
1913 Female, age 42, unknown 30.6
2668 Female, age 75, unknown 28.8
1839 Male, age 51, unknown 27.1
2664 Male, age 75, both hemispheres 27.0
2587 Male, age 74, left hemisphere 26.7
1895 Male, age 76, right hemisphere 26.4
2087 Female, age 72, unknown 26.3
1796 Male, age 53, unknown 26.0
2261 Male, age 18, unknown 24.1
Ventral tegmental area
nTPM: 29.7
2223 Female, age 72, unknown 33.1
2021 Male, age 53, unknown 30.9
1915 Female, age 42, unknown 30.8
2410 Female, age 72, unknown 28.9
1942 Male, age 51, unknown 27.1
2218 Male, age 76, both hemispheres 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.9
Samples: 139

Max nTPM: 66.1
Min nTPM: 11.4
Std nTPM: 11.5
Median nTPM: 28.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 66.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 56.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 55.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 52.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 52.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 52.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 51.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 20.5
Min nTPM: 8.8
Sample A Female 20.5
Sample B Female 11.8
Sample C Male 11.3
Sample D Male 8.8
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 12.8
Min nTPM: 11.1
Sample B Female 11.2
Sample C Male 12.8
Sample D Male 11.1
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.7
Sample A Female 15.7
Sample B Female 16.0
Sample C Male 12.7
Sample D Male 13.0
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 12.3
Sample A Female 19.5
Sample B Female 25.7
Sample C Male 12.6
Sample D Male 12.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.4
Sample A Male 5.3
Sample B Male 3.4
Sample C Female 3.6
Sample D Female 4.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
275693 Antisense, RP_040617_01_C04, Mouse strain C57BL/6J (56 days, male) 4.5
321202 Antisense, RP_040617_01_C04, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.