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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:23.9 nTPM
HPA:23.9 nTPM
GTEx:22.6 nTPM
FANTOM5:40.6 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:19.1 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005832
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.0
1857 Female, age 85, left hemisphere 32.2
2290 Female, age 72, unknown 30.3
2846 Female, age 79, unknown 27.1
1854 Male, age 80, left hemisphere 26.1
2289 Male, age 61, right hemisphere 23.7
1781 Male, age 74, unknown 16.7
2288 Male, age 75, left hemisphere 15.8
2481 Female, age 94, left hemisphere 11.9
Claustrum
nTPM: 4.0
2196 Female, age 79, unknown 9.7
2568 Male, age 61, both hemispheres 5.2
2284 Female, age 91, both hemispheres 4.0
2392 Female, age 94, both hemispheres 3.9
2198 Male, age 80, both hemispheres 3.6
1956 Male, age 74, unknown 2.5
2645 Female, age 72, unknown 2.5
2491 Male, age 75, both hemispheres 2.3
2292 Female, age 85, both hemispheres 2.1
Globus pallidus, externus
nTPM: 4.4
2646 Male, age 61, right hemisphere 7.5
2567 Female, age 72, unknown 4.5
2395 Male, age 75, both hemispheres 3.9
1996 Male, age 80, right hemisphere 3.2
2772 Female, age 79, unknown 3.0
Globus pallidus, internus
nTPM: 3.8
2483 Female, age 94, right hemisphere 7.7
2566 Female, age 72, unknown 3.7
2037 Male, age 80, right hemisphere 3.5
2287 Male, age 75, right hemisphere 3.1
1818 Male, age 74, unknown 3.0
2778 Female, age 91, both hemispheres 2.8
2111 Female, age 85, right hemisphere 2.7
Nucleus accumbens
nTPM: 20.0
1783 Male, age 74, unknown 30.9
1806 Female, age 85, left hemisphere 27.9
2824 Male, age 61, right hemisphere 25.3
1856 Female, age 91, right hemisphere 25.0
2698 Female, age 72, unknown 17.5
2286 Male, age 75, left hemisphere 14.7
2732 Male, age 80, right hemisphere 9.6
2391 Female, age 94, left hemisphere 9.4
Nucleus basalis of Meynert
nTPM: 15.4
2393 Male, age 80, right hemisphere 21.7
2484 Female, age 94, left hemisphere 18.6
2821 Male, age 75, both hemispheres 11.2
2569 Male, age 61, both hemispheres 10.1
Nucleus of the diagonal band
nTPM: 3.7
1979 Male, age 74, unknown 5.1
1812 Female, age 91, both hemispheres 3.7
2195 Female, age 85, both hemispheres 3.5
2029 Male, age 61, right hemisphere 3.2
2775 Male, age 80, right hemisphere 3.2
Olfactory tubercle
nTPM: 3.0
1846 Male, age 80, right hemisphere 3.4
2856 Male, age 75, right hemisphere 3.4
1998 Female, age 91, both hemispheres 2.8
2487 Female, age 94, left hemisphere 2.6
Putamen
nTPM: 23.9
1838 Male, age 80, right hemisphere 30.8
2489 Female, age 72, unknown 29.4
2466 Female, age 79, unknown 27.7
1829 Male, age 74, unknown 26.8
1937 Female, age 91, right hemisphere 22.5
2647 Male, age 75, left hemisphere 15.8
2482 Female, age 94, left hemisphere 14.1
Septal nuclei
nTPM: 4.0
2394 Male, age 61, left hemisphere 5.2
2199 Male, age 80, right hemisphere 5.0
2059 Female, age 85, both hemispheres 4.3
2009 Female, age 91, both hemispheres 4.0
1960 Male, age 74, unknown 3.7
2629 Female, age 94, right hemisphere 3.1
2031 Female, age 72, unknown 2.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.0
Samples: 246

Max nTPM: 42.8
Min nTPM: 1.5
Std nTPM: 8.3
Median nTPM: 22.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 42.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 42.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 38.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 38.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 38.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 38.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 38.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 37.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 37.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 35.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 53.3
Min nTPM: 1.1
Std nTPM: 9.6
Median nTPM: 23.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 53.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 45.9
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 43.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 43.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 42.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 41.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 41.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 40.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 39.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 38.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 38.1
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Brain - Putamen (basal ganglia)
Average nTPM: 20.6
Samples: 205

Max nTPM: 61.5
Min nTPM: 2.3
Std nTPM: 9.6
Median nTPM: 20.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 61.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 40.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 39.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 38.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 38.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 36.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 35.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 35.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 34.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 34.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 34.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.6
FF:10164-103B2 76 years, female 40.6
Globus pallidus
Scaled Tags Per Million: 10.3
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 8.1
Nucleus accumbens
Scaled Tags Per Million: 21.7
FF:10037-101F1 23-56 years, mixed 21.7
Putamen
Scaled Tags Per Million: 35.6
FF:10176-103C5 60 years, female 35.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Caudate
nTPM: 37.0
Samples: 4

Max nTPM: 51.4
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 31.5
Sample C Male 44.2
Sample D Male 51.4
Putamen
nTPM: 29.2
Samples: 4

Max nTPM: 41.6
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 31.5
Sample C Male 35.4
Sample D Male 41.6
Septum
nTPM: 11.5
Samples: 4

Max nTPM: 17.8
Min nTPM: 3.5
Sample A Female 17.6
Sample B Female 17.8
Sample C Male 3.5
Sample D Male 7.0
Ventral pallidum
nTPM: 18.0
Samples: 4

Max nTPM: 31.4
Min nTPM: 5.8
Sample A Female 31.4
Sample B Female 11.9
Sample C Male 5.8
Sample D Male 22.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.1
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.6
Sample A Male 20.4
Sample B Male 21.8
Sample C Female 17.5
Sample D Female 16.6
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.2
Sample A Male 4.3
Sample B Male 3.2
Sample C Female 3.2
Sample D Female 4.5
Ventral forebrain
nTPM: 7.4
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.4
Sample A Male 9.2
Sample B Male 7.1
Sample C Female 6.4
Sample D Female 6.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
74363346 Antisense, RP_051019_01_A01, Mouse strain C57BL/6J (56 days, male) 3.2
72081708 Antisense, RP_051019_01_A01, Mouse strain C57BL/6J (56 days, male) 2.8
Pallidum
Expression energy: 0.6
74363346 Antisense, RP_051019_01_A01, Mouse strain C57BL/6J (56 days, male) 0.6
72081708 Antisense, RP_051019_01_A01, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.