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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.8 nTPM
HPA:58.8 nTPM
GTEx:60.0 nTPM
FANTOM5:102.9 Scaled Tags Per Million
Pig:77.3 nTPM
Mouse:94.0 nTPM
Allen mouse:13.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.6
1857 Female, age 85, left hemisphere 56.0
2288 Male, age 75, left hemisphere 55.7
1854 Male, age 80, left hemisphere 54.1
2846 Female, age 79, unknown 53.8
2481 Female, age 94, left hemisphere 53.5
2290 Female, age 72, unknown 52.2
2289 Male, age 61, right hemisphere 49.0
1781 Male, age 74, unknown 46.0
Claustrum
nTPM: 48.8
2196 Female, age 79, unknown 51.9
1956 Male, age 74, unknown 51.8
2491 Male, age 75, both hemispheres 50.9
2392 Female, age 94, both hemispheres 50.8
2292 Female, age 85, both hemispheres 49.7
2198 Male, age 80, both hemispheres 49.2
2568 Male, age 61, both hemispheres 48.5
2284 Female, age 91, both hemispheres 44.1
2645 Female, age 72, unknown 42.4
Globus pallidus, externus
nTPM: 56.8
1996 Male, age 80, right hemisphere 64.9
2646 Male, age 61, right hemisphere 58.7
2567 Female, age 72, unknown 56.2
2395 Male, age 75, both hemispheres 52.8
2772 Female, age 79, unknown 51.5
Globus pallidus, internus
nTPM: 58.8
2483 Female, age 94, right hemisphere 68.5
2287 Male, age 75, right hemisphere 66.5
2778 Female, age 91, both hemispheres 57.4
2037 Male, age 80, right hemisphere 55.8
1818 Male, age 74, unknown 54.9
2111 Female, age 85, right hemisphere 54.6
2566 Female, age 72, unknown 53.7
Nucleus accumbens
nTPM: 53.0
2698 Female, age 72, unknown 60.2
1856 Female, age 91, right hemisphere 55.9
1806 Female, age 85, left hemisphere 54.2
2391 Female, age 94, left hemisphere 53.6
2286 Male, age 75, left hemisphere 52.8
1783 Male, age 74, unknown 50.9
2824 Male, age 61, right hemisphere 50.4
2732 Male, age 80, right hemisphere 46.0
Nucleus basalis of Meynert
nTPM: 54.0
2569 Male, age 61, both hemispheres 64.4
2393 Male, age 80, right hemisphere 52.0
2484 Female, age 94, left hemisphere 50.0
2821 Male, age 75, both hemispheres 49.6
Nucleus of the diagonal band
nTPM: 48.6
1812 Female, age 91, both hemispheres 51.9
1979 Male, age 74, unknown 49.4
2775 Male, age 80, right hemisphere 48.8
2195 Female, age 85, both hemispheres 47.0
2029 Male, age 61, right hemisphere 45.8
Olfactory tubercle
nTPM: 46.8
1846 Male, age 80, right hemisphere 52.3
2856 Male, age 75, right hemisphere 47.3
2487 Female, age 94, left hemisphere 44.1
1998 Female, age 91, both hemispheres 43.6
Putamen
nTPM: 52.2
2482 Female, age 94, left hemisphere 56.3
1829 Male, age 74, unknown 54.6
2647 Male, age 75, left hemisphere 54.3
1838 Male, age 80, right hemisphere 54.1
2489 Female, age 72, unknown 49.9
1937 Female, age 91, right hemisphere 48.2
2466 Female, age 79, unknown 47.9
Septal nuclei
nTPM: 47.9
2199 Male, age 80, right hemisphere 50.1
2629 Female, age 94, right hemisphere 49.0
2009 Female, age 91, both hemispheres 47.8
2394 Male, age 61, left hemisphere 47.5
1960 Male, age 74, unknown 47.2
2059 Female, age 85, both hemispheres 46.9
2031 Female, age 72, unknown 46.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.1
Samples: 246

Max nTPM: 89.6
Min nTPM: 28.0
Std nTPM: 9.0
Median nTPM: 57.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 89.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 83.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 79.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 79.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 78.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 78.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 77.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 77.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 76.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 76.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 76.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.3
Samples: 246

Max nTPM: 94.9
Min nTPM: 19.8
Std nTPM: 10.2
Median nTPM: 55.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 94.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 90.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 79.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 79.5
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 77.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 76.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 76.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 76.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 76.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 74.0
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 72.3
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Brain - Putamen (basal ganglia)
Average nTPM: 60.0
Samples: 205

Max nTPM: 117.7
Min nTPM: 32.2
Std nTPM: 12.2
Median nTPM: 59.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 117.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 110.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 101.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 99.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 97.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 95.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 83.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 83.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 80.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 80.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 79.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.9
FF:10164-103B2 76 years, female 78.9
Globus pallidus
Scaled Tags Per Million: 94.7
FF:10161-103A8 76 years, female 95.5
FF:10175-103C4 60 years, female 93.9
Nucleus accumbens
Scaled Tags Per Million: 88.3
FF:10037-101F1 23-56 years, mixed 88.3
Putamen
Scaled Tags Per Million: 102.9
FF:10176-103C5 60 years, female 102.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 77.3
Pig sample Sample description nTPM
Caudate
nTPM: 67.6
Samples: 4

Max nTPM: 74.8
Min nTPM: 63.6
Sample A Female 67.9
Sample B Female 63.6
Sample C Male 74.8
Sample D Male 64.2
Putamen
nTPM: 77.3
Samples: 4

Max nTPM: 103.2
Min nTPM: 65.6
Sample A Female 65.6
Sample B Female 68.8
Sample C Male 103.2
Sample D Male 71.5
Septum
nTPM: 68.5
Samples: 4

Max nTPM: 80.3
Min nTPM: 61.8
Sample A Female 80.3
Sample B Female 69.4
Sample C Male 62.6
Sample D Male 61.8
Ventral pallidum
nTPM: 68.0
Samples: 4

Max nTPM: 77.2
Min nTPM: 56.1
Sample A Female 77.2
Sample B Female 72.5
Sample C Male 56.1
Sample D Male 66.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 94.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 92.7
Samples: 4

Max nTPM: 94.7
Min nTPM: 88.8
Sample A Male 93.9
Sample B Male 88.8
Sample C Female 94.7
Sample D Female 93.3
Septum
nTPM: 83.0
Samples: 4

Max nTPM: 88.1
Min nTPM: 78.0
Sample A Male 88.1
Sample B Male 82.7
Sample C Female 83.1
Sample D Female 78.0
Ventral forebrain
nTPM: 94.0
Samples: 4

Max nTPM: 104.4
Min nTPM: 76.5
Sample A Male 104.4
Sample B Male 97.0
Sample C Female 76.5
Sample D Female 98.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 13.4
67792192 Antisense, RP_040920_01_C10, Mouse strain C57BL/6J (56 days, male) 13.7
70743906 Antisense, RP_050725_02_A10, Mouse strain C57BL/6J (56 days, male) 13.2
Pallidum
Expression energy: 10.8
67792192 Antisense, RP_040920_01_C10, Mouse strain C57BL/6J (56 days, male) 11.6
70743906 Antisense, RP_050725_02_A10, Mouse strain C57BL/6J (56 days, male) 10.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.