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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.1 nTPM
HPA:132.1 nTPM
GTEx:136.2 nTPM
FANTOM5:246.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.9
1870 Female, age 42, unknown 132.0
1827 Male, age 72, unknown 129.0
2411 Female, age 72, unknown 128.4
1833 Male, age 53, unknown 118.4
1830 Male, age 51, unknown 117.8
2019 Male, age 18, unknown 117.3
2828 Female, age 72, unknown 111.3
2219 Male, age 76, both hemispheres 109.9
2666 Male, age 74, left hemisphere 107.5
2586 Male, age 75, left hemisphere 107.2
Dorsal raphe nucleus
nTPM: 116.2
2298 Female, age 72, unknown 124.3
2016 Female, age 72, unknown 118.1
2750 Male, age 76, both hemispheres 116.8
2047 Male, age 72, unknown 111.1
1828 Male, age 53, unknown 110.5
Inferior colliculus
nTPM: 132.1
2097 Female, age 72, unknown 142.0
1848 Female, age 42, unknown 138.3
2849 Male, age 72, unknown 129.0
1890 Male, age 53, unknown 118.9
Median raphe nucleus
nTPM: 115.2
2220 Male, age 76, midline 115.2
Pedunculopontine tegmental nucleus
nTPM: 118.3
1921 Female, age 85, both hemispheres 127.7
2334 Male, age 80, both hemispheres 116.8
2338 Male, age 61, both hemispheres 110.3
Periaquaductal grey, anterior
nTPM: 125.6
1947 Male, age 18, unknown 130.9
2502 Female, age 75, unknown 127.1
1795 Male, age 51, unknown 119.0
Periaquaductal grey, dorsal
nTPM: 123.8
1840 Male, age 53, unknown 129.8
1831 Male, age 72, unknown 123.4
2464 Female, age 72, unknown 122.1
2850 Male, age 76, both hemispheres 119.9
Periaquaductal grey, lateral
nTPM: 121.2
2053 Male, age 18, unknown 129.8
2272 Male, age 74, both hemispheres 119.8
2140 Male, age 76, both hemispheres 113.9
Pretectal area
nTPM: 127.8
1944 Female, age 72, unknown 137.9
1816 Male, age 51, unknown 137.1
1815 Male, age 53, unknown 132.9
1817 Female, age 42, unknown 130.7
2007 Male, age 72, unknown 129.4
2273 Male, age 74, both hemispheres 128.8
2224 Female, age 72, unknown 126.5
2667 Female, age 75, unknown 126.5
2825 Male, age 18, unknown 123.9
2407 Male, age 75, both hemispheres 119.7
2316 Male, age 76, right hemisphere 112.5
Red nucleus
nTPM: 119.4
1821 Female, age 72, unknown 132.9
2503 Female, age 72, unknown 129.2
2725 Female, age 75, unknown 125.1
1865 Male, age 51, unknown 124.6
1954 Female, age 42, unknown 123.4
1904 Male, age 53, unknown 119.5
2785 Male, age 18, unknown 115.8
2588 Male, age 74, left hemisphere 115.2
2769 Male, age 72, unknown 115.0
2227 Male, age 72, unknown 112.8
2823 Male, age 76, right hemisphere 109.7
2584 Male, age 75, left hemisphere 109.3
Substantia nigra
nTPM: 116.3
1889 Female, age 72, unknown 132.3
2241 Male, age 72, unknown 125.0
2409 Female, age 72, unknown 122.3
1941 Male, age 53, unknown 120.9
2590 Female, age 75, unknown 119.2
2665 Male, age 74, both hemispheres 111.2
2583 Male, age 75, right hemisphere 110.6
1851 Male, age 51, unknown 108.3
1916 Female, age 42, unknown 107.5
2699 Male, age 18, unknown 105.6
Superior colliculus
nTPM: 123.7
1895 Male, age 76, right hemisphere 133.6
2261 Male, age 18, unknown 128.9
1913 Female, age 42, unknown 127.9
1796 Male, age 53, unknown 126.6
2587 Male, age 74, left hemisphere 125.9
1839 Male, age 51, unknown 125.2
2087 Female, age 72, unknown 124.9
1995 Male, age 72, unknown 120.1
2668 Female, age 75, unknown 113.6
2664 Male, age 75, both hemispheres 109.9
Ventral tegmental area
nTPM: 117.5
2410 Female, age 72, unknown 126.3
2223 Female, age 72, unknown 122.0
1942 Male, age 51, unknown 116.3
2021 Male, age 53, unknown 115.2
1915 Female, age 42, unknown 114.4
2218 Male, age 76, both hemispheres 111.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.2
Samples: 139

Max nTPM: 246.1
Min nTPM: 85.9
Std nTPM: 27.0
Median nTPM: 132.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 246.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 239.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 205.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 192.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 190.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 187.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 186.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 186.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 180.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 178.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 176.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 246.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 246.4
FF:10158-103A5 76 years, female 246.4

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