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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.6 nTPM
HPA:109.6 nTPM
GTEx:119.9 nTPM
FANTOM5:122.2 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:55.1 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.2
2019 Male, age 18, unknown 111.7
1870 Female, age 42, unknown 108.3
2411 Female, age 72, unknown 105.3
2828 Female, age 72, unknown 104.4
1830 Male, age 51, unknown 103.1
2666 Male, age 74, left hemisphere 102.7
1833 Male, age 53, unknown 101.4
1827 Male, age 72, unknown 101.3
2586 Male, age 75, left hemisphere 99.3
2219 Male, age 76, both hemispheres 94.2
Dorsal raphe nucleus
nTPM: 102.3
2750 Male, age 76, both hemispheres 106.4
1828 Male, age 53, unknown 102.8
2298 Female, age 72, unknown 102.1
2016 Female, age 72, unknown 100.6
2047 Male, age 72, unknown 99.6
Inferior colliculus
nTPM: 98.2
2097 Female, age 72, unknown 100.4
1890 Male, age 53, unknown 99.3
1848 Female, age 42, unknown 98.1
2849 Male, age 72, unknown 94.9
Median raphe nucleus
nTPM: 98.7
2220 Male, age 76, midline 98.7
Pedunculopontine tegmental nucleus
nTPM: 102.0
2334 Male, age 80, both hemispheres 102.9
2338 Male, age 61, both hemispheres 102.3
1921 Female, age 85, both hemispheres 100.6
Periaquaductal grey, anterior
nTPM: 99.4
2502 Female, age 75, unknown 102.7
1947 Male, age 18, unknown 99.6
1795 Male, age 51, unknown 95.8
Periaquaductal grey, dorsal
nTPM: 96.5
2464 Female, age 72, unknown 97.5
2850 Male, age 76, both hemispheres 96.9
1831 Male, age 72, unknown 95.8
1840 Male, age 53, unknown 95.6
Periaquaductal grey, lateral
nTPM: 98.1
2053 Male, age 18, unknown 99.5
2140 Male, age 76, both hemispheres 97.6
2272 Male, age 74, both hemispheres 97.2
Pretectal area
nTPM: 101.5
1817 Female, age 42, unknown 107.7
2007 Male, age 72, unknown 107.6
1815 Male, age 53, unknown 103.3
2273 Male, age 74, both hemispheres 102.5
2667 Female, age 75, unknown 102.5
1816 Male, age 51, unknown 101.1
2316 Male, age 76, right hemisphere 100.8
1944 Female, age 72, unknown 100.4
2407 Male, age 75, both hemispheres 97.0
2825 Male, age 18, unknown 97.0
2224 Female, age 72, unknown 96.6
Red nucleus
nTPM: 109.6
1821 Female, age 72, unknown 119.2
1865 Male, age 51, unknown 114.4
1904 Male, age 53, unknown 113.8
2785 Male, age 18, unknown 110.5
2823 Male, age 76, right hemisphere 110.5
2769 Male, age 72, unknown 110.4
2227 Male, age 72, unknown 110.3
1954 Female, age 42, unknown 110.2
2503 Female, age 72, unknown 109.9
2725 Female, age 75, unknown 104.2
2588 Male, age 74, left hemisphere 103.5
2584 Male, age 75, left hemisphere 98.7
Substantia nigra
nTPM: 103.8
1851 Male, age 51, unknown 108.9
1916 Female, age 42, unknown 108.2
1889 Female, age 72, unknown 107.4
1941 Male, age 53, unknown 103.9
2590 Female, age 75, unknown 103.2
2665 Male, age 74, both hemispheres 103.2
2699 Male, age 18, unknown 103.2
2583 Male, age 75, right hemisphere 101.5
2241 Male, age 72, unknown 99.6
2409 Female, age 72, unknown 99.1
Superior colliculus
nTPM: 101.2
2587 Male, age 74, left hemisphere 107.6
1995 Male, age 72, unknown 106.5
1913 Female, age 42, unknown 105.4
2668 Female, age 75, unknown 101.4
2087 Female, age 72, unknown 99.8
1796 Male, age 53, unknown 99.6
1895 Male, age 76, right hemisphere 99.4
1839 Male, age 51, unknown 99.3
2664 Male, age 75, both hemispheres 96.7
2261 Male, age 18, unknown 95.9
Ventral tegmental area
nTPM: 103.3
2410 Female, age 72, unknown 107.3
2223 Female, age 72, unknown 107.2
1915 Female, age 42, unknown 104.4
2218 Male, age 76, both hemispheres 100.9
1942 Male, age 51, unknown 100.2
2021 Male, age 53, unknown 99.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.9
Samples: 139

Max nTPM: 195.3
Min nTPM: 78.1
Std nTPM: 20.8
Median nTPM: 114.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 195.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 186.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 174.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 170.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 161.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 161.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 158.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 158.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 153.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 153.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 152.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.2
FF:10158-103A5 76 years, female 122.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 48.7
Min nTPM: 33.9
Sample A Female 48.7
Sample B Female 42.1
Sample C Male 33.9
Sample D Male 38.3
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 42.1
Min nTPM: 32.5
Sample B Female 38.0
Sample C Male 42.1
Sample D Male 32.5
Substantia nigra
nTPM: 39.0
Samples: 4

Max nTPM: 50.6
Min nTPM: 29.8
Sample A Female 50.6
Sample B Female 29.8
Sample C Male 40.1
Sample D Male 35.3
Superior colliculi
nTPM: 41.7
Samples: 4

Max nTPM: 54.1
Min nTPM: 28.9
Sample A Female 54.1
Sample B Female 28.9
Sample C Male 40.9
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 57.4
Min nTPM: 52.7
Sample A Male 57.4
Sample B Male 53.2
Sample C Female 52.7
Sample D Female 57.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
70429112 Antisense, RP_050614_01_A05, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.