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RNH1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:88.5 nTPM
FANTOM5:152.2 Scaled Tags Per Million
Pig:39.5 nTPM
Mouse:53.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
2411 Female, age 72, unknown 40.7
2019 Male, age 18, unknown 38.9
1830 Male, age 51, unknown 34.7
1870 Female, age 42, unknown 34.7
1833 Male, age 53, unknown 34.6
2828 Female, age 72, unknown 31.1
2586 Male, age 75, left hemisphere 29.8
1827 Male, age 72, unknown 28.1
2666 Male, age 74, left hemisphere 25.6
2219 Male, age 76, both hemispheres 24.9
Dorsal raphe nucleus
nTPM: 29.1
2750 Male, age 76, both hemispheres 37.6
2016 Female, age 72, unknown 29.1
2298 Female, age 72, unknown 27.4
1828 Male, age 53, unknown 26.7
2047 Male, age 72, unknown 24.9
Inferior colliculus
nTPM: 25.8
2097 Female, age 72, unknown 27.1
1890 Male, age 53, unknown 26.9
1848 Female, age 42, unknown 25.7
2849 Male, age 72, unknown 23.7
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Pedunculopontine tegmental nucleus
nTPM: 28.8
2334 Male, age 80, both hemispheres 32.4
1921 Female, age 85, both hemispheres 27.2
2338 Male, age 61, both hemispheres 26.7
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 30.5
1947 Male, age 18, unknown 25.7
1795 Male, age 51, unknown 25.1
Periaquaductal grey, dorsal
nTPM: 23.0
2464 Female, age 72, unknown 29.1
1831 Male, age 72, unknown 22.3
2850 Male, age 76, both hemispheres 21.6
1840 Male, age 53, unknown 19.2
Periaquaductal grey, lateral
nTPM: 27.1
2272 Male, age 74, both hemispheres 30.2
2140 Male, age 76, both hemispheres 25.6
2053 Male, age 18, unknown 25.5
Pretectal area
nTPM: 26.7
2316 Male, age 76, right hemisphere 30.7
1815 Male, age 53, unknown 29.9
2273 Male, age 74, both hemispheres 29.8
2007 Male, age 72, unknown 29.2
1817 Female, age 42, unknown 27.1
2407 Male, age 75, both hemispheres 26.5
2667 Female, age 75, unknown 25.7
2825 Male, age 18, unknown 25.6
2224 Female, age 72, unknown 25.1
1944 Female, age 72, unknown 22.8
1816 Male, age 51, unknown 21.6
Red nucleus
nTPM: 39.7
1904 Male, age 53, unknown 47.5
2769 Male, age 72, unknown 45.9
2227 Male, age 72, unknown 43.7
2785 Male, age 18, unknown 42.6
2503 Female, age 72, unknown 42.4
1865 Male, age 51, unknown 42.0
1954 Female, age 42, unknown 41.9
1821 Female, age 72, unknown 39.2
2823 Male, age 76, right hemisphere 38.6
2725 Female, age 75, unknown 31.9
2588 Male, age 74, left hemisphere 31.7
2584 Male, age 75, left hemisphere 29.2
Substantia nigra
nTPM: 26.3
2583 Male, age 75, right hemisphere 31.9
1851 Male, age 51, unknown 30.4
2590 Female, age 75, unknown 30.2
1889 Female, age 72, unknown 26.9
1916 Female, age 42, unknown 26.1
2409 Female, age 72, unknown 26.0
2699 Male, age 18, unknown 25.2
1941 Male, age 53, unknown 24.3
2665 Male, age 74, both hemispheres 22.2
2241 Male, age 72, unknown 20.2
Superior colliculus
nTPM: 29.3
1995 Male, age 72, unknown 39.0
1913 Female, age 42, unknown 36.8
1839 Male, age 51, unknown 30.2
1796 Male, age 53, unknown 29.6
2587 Male, age 74, left hemisphere 28.9
2668 Female, age 75, unknown 27.9
2261 Male, age 18, unknown 26.3
1895 Male, age 76, right hemisphere 25.7
2087 Female, age 72, unknown 25.1
2664 Male, age 75, both hemispheres 23.5
Ventral tegmental area
nTPM: 30.3
2410 Female, age 72, unknown 36.2
2223 Female, age 72, unknown 34.2
1915 Female, age 42, unknown 28.4
1942 Male, age 51, unknown 28.3
2218 Male, age 76, both hemispheres 27.9
2021 Male, age 53, unknown 26.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.5
Samples: 139

Max nTPM: 200.0
Min nTPM: 45.1
Std nTPM: 26.4
Median nTPM: 83.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 200.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 182.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 166.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 164.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 156.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 148.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 146.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 144.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 135.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 135.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 129.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 152.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 152.2
FF:10158-103A5 76 years, female 152.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.5
Pig sample Sample description nTPM
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 64.2
Min nTPM: 25.6
Sample A Female 64.2
Sample B Female 33.1
Sample C Male 35.2
Sample D Male 25.6
Periaqueductal gray
nTPM: 29.2
Samples: 3

Max nTPM: 33.7
Min nTPM: 24.9
Sample B Female 29.1
Sample C Male 33.7
Sample D Male 24.9
Substantia nigra
nTPM: 36.9
Samples: 4

Max nTPM: 46.3
Min nTPM: 32.1
Sample A Female 46.3
Sample B Female 32.1
Sample C Male 34.8
Sample D Male 34.2
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 40.4
Min nTPM: 34.2
Sample A Female 40.4
Sample B Female 37.1
Sample C Male 34.3
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.0
Samples: 4

Max nTPM: 62.5
Min nTPM: 46.4
Sample A Male 62.5
Sample B Male 50.7
Sample C Female 46.4
Sample D Female 52.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
74800925 Antisense, RP_060315_02_A09, Mouse strain C57BL/6J (56 days, male) 2.1
413828 Antisense, RP_040809_01_H06, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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