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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:17.6 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:4.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.1
2828 Female, age 72, unknown 15.6
1870 Female, age 42, unknown 15.4
1833 Male, age 53, unknown 14.9
1830 Male, age 51, unknown 14.8
2411 Female, age 72, unknown 14.6
1827 Male, age 72, unknown 14.2
2019 Male, age 18, unknown 13.6
2586 Male, age 75, left hemisphere 12.9
2219 Male, age 76, both hemispheres 12.7
2666 Male, age 74, left hemisphere 12.6
Dorsal raphe nucleus
nTPM: 14.6
2298 Female, age 72, unknown 15.9
2016 Female, age 72, unknown 15.4
2750 Male, age 76, both hemispheres 14.5
2047 Male, age 72, unknown 13.7
1828 Male, age 53, unknown 13.5
Inferior colliculus
nTPM: 13.9
1848 Female, age 42, unknown 14.0
2849 Male, age 72, unknown 14.0
1890 Male, age 53, unknown 13.9
2097 Female, age 72, unknown 13.6
Median raphe nucleus
nTPM: 12.2
2220 Male, age 76, midline 12.2
Pedunculopontine tegmental nucleus
nTPM: 14.8
2338 Male, age 61, both hemispheres 15.9
2334 Male, age 80, both hemispheres 14.5
1921 Female, age 85, both hemispheres 14.0
Periaquaductal grey, anterior
nTPM: 14.2
1947 Male, age 18, unknown 15.9
2502 Female, age 75, unknown 13.9
1795 Male, age 51, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 13.9
2850 Male, age 76, both hemispheres 14.8
1840 Male, age 53, unknown 14.0
1831 Male, age 72, unknown 13.9
2464 Female, age 72, unknown 12.9
Periaquaductal grey, lateral
nTPM: 14.2
2140 Male, age 76, both hemispheres 14.5
2053 Male, age 18, unknown 14.1
2272 Male, age 74, both hemispheres 14.1
Pretectal area
nTPM: 14.0
1815 Male, age 53, unknown 15.1
2667 Female, age 75, unknown 15.0
2273 Male, age 74, both hemispheres 14.7
2224 Female, age 72, unknown 14.5
1817 Female, age 42, unknown 14.3
2825 Male, age 18, unknown 14.2
2316 Male, age 76, right hemisphere 13.7
1816 Male, age 51, unknown 13.6
1944 Female, age 72, unknown 13.5
2007 Male, age 72, unknown 12.8
2407 Male, age 75, both hemispheres 12.6
Red nucleus
nTPM: 14.7
1821 Female, age 72, unknown 16.2
1865 Male, age 51, unknown 16.2
1954 Female, age 42, unknown 16.1
1904 Male, age 53, unknown 15.6
2503 Female, age 72, unknown 15.5
2769 Male, age 72, unknown 14.8
2823 Male, age 76, right hemisphere 14.4
2725 Female, age 75, unknown 14.2
2227 Male, age 72, unknown 14.1
2588 Male, age 74, left hemisphere 13.8
2785 Male, age 18, unknown 13.4
2584 Male, age 75, left hemisphere 12.5
Substantia nigra
nTPM: 14.2
2409 Female, age 72, unknown 15.8
2665 Male, age 74, both hemispheres 14.9
1889 Female, age 72, unknown 14.5
2241 Male, age 72, unknown 14.5
2699 Male, age 18, unknown 14.5
2590 Female, age 75, unknown 14.4
1851 Male, age 51, unknown 13.6
1916 Female, age 42, unknown 13.6
2583 Male, age 75, right hemisphere 13.5
1941 Male, age 53, unknown 13.2
Superior colliculus
nTPM: 14.1
1913 Female, age 42, unknown 16.0
1995 Male, age 72, unknown 16.0
2587 Male, age 74, left hemisphere 14.5
1895 Male, age 76, right hemisphere 14.2
1839 Male, age 51, unknown 13.9
1796 Male, age 53, unknown 13.6
2261 Male, age 18, unknown 13.6
2668 Female, age 75, unknown 13.5
2087 Female, age 72, unknown 13.4
2664 Male, age 75, both hemispheres 11.9
Ventral tegmental area
nTPM: 13.6
2410 Female, age 72, unknown 14.4
1942 Male, age 51, unknown 14.0
2218 Male, age 76, both hemispheres 13.6
2223 Female, age 72, unknown 13.5
2021 Male, age 53, unknown 13.3
1915 Female, age 42, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 31.0
Min nTPM: 7.5
Std nTPM: 5.0
Median nTPM: 16.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 29.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 28.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 27.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 27.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 27.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 26.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 26.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 26.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 26.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 26.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.5
FF:10158-103A5 76 years, female 29.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 17.1
Min nTPM: 10.2
Sample A Female 17.1
Sample B Female 13.7
Sample C Male 10.2
Sample D Male 10.6
Periaqueductal gray
nTPM: 12.6
Samples: 3

Max nTPM: 13.5
Min nTPM: 11.1
Sample B Female 13.2
Sample C Male 11.1
Sample D Male 13.5
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.9
Sample A Female 11.0
Sample B Female 13.3
Sample C Male 10.9
Sample D Male 14.2
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 13.7
Min nTPM: 10.5
Sample A Female 10.8
Sample B Female 13.7
Sample C Male 10.8
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.5
Sample A Male 4.1
Sample B Male 4.7
Sample C Female 3.5
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68342234 Antisense, RP_041214_01_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.