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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:85.3 nTPM
FANTOM5:142.6 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:50.8 nTPM
Allen mouse:4.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018845Antibody HPA056875
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.6
1857 Female, age 85, left hemisphere 47.5
2290 Female, age 72, unknown 43.7
1854 Male, age 80, left hemisphere 42.1
2846 Female, age 79, unknown 39.3
1781 Male, age 74, unknown 37.0
2288 Male, age 75, left hemisphere 31.3
2289 Male, age 61, right hemisphere 30.3
2481 Female, age 94, left hemisphere 29.8
Claustrum
nTPM: 32.6
2198 Male, age 80, both hemispheres 38.3
2196 Female, age 79, unknown 35.0
2284 Female, age 91, both hemispheres 34.1
2645 Female, age 72, unknown 33.2
2568 Male, age 61, both hemispheres 32.9
2491 Male, age 75, both hemispheres 32.8
1956 Male, age 74, unknown 29.1
2392 Female, age 94, both hemispheres 29.0
2292 Female, age 85, both hemispheres 28.7
Globus pallidus, externus
nTPM: 23.4
2646 Male, age 61, right hemisphere 24.6
2772 Female, age 79, unknown 24.0
2395 Male, age 75, both hemispheres 23.9
2567 Female, age 72, unknown 23.2
1996 Male, age 80, right hemisphere 21.4
Globus pallidus, internus
nTPM: 23.1
2483 Female, age 94, right hemisphere 29.0
2287 Male, age 75, right hemisphere 24.2
1818 Male, age 74, unknown 22.6
2566 Female, age 72, unknown 22.5
2037 Male, age 80, right hemisphere 21.9
2778 Female, age 91, both hemispheres 21.1
2111 Female, age 85, right hemisphere 20.1
Nucleus accumbens
nTPM: 40.3
1856 Female, age 91, right hemisphere 51.4
1806 Female, age 85, left hemisphere 48.3
1783 Male, age 74, unknown 47.3
2698 Female, age 72, unknown 42.7
2824 Male, age 61, right hemisphere 42.3
2286 Male, age 75, left hemisphere 33.7
2391 Female, age 94, left hemisphere 29.0
2732 Male, age 80, right hemisphere 28.0
Nucleus basalis of Meynert
nTPM: 29.7
2393 Male, age 80, right hemisphere 32.8
2484 Female, age 94, left hemisphere 30.2
2821 Male, age 75, both hemispheres 29.7
2569 Male, age 61, both hemispheres 26.0
Nucleus of the diagonal band
nTPM: 32.9
2195 Female, age 85, both hemispheres 37.1
2775 Male, age 80, right hemisphere 35.7
1812 Female, age 91, both hemispheres 34.4
2029 Male, age 61, right hemisphere 29.3
1979 Male, age 74, unknown 28.0
Olfactory tubercle
nTPM: 32.8
1998 Female, age 91, both hemispheres 35.5
1846 Male, age 80, right hemisphere 32.8
2487 Female, age 94, left hemisphere 32.2
2856 Male, age 75, right hemisphere 30.8
Putamen
nTPM: 35.2
1838 Male, age 80, right hemisphere 46.2
1937 Female, age 91, right hemisphere 41.4
2466 Female, age 79, unknown 34.9
1829 Male, age 74, unknown 34.7
2647 Male, age 75, left hemisphere 31.3
2482 Female, age 94, left hemisphere 29.3
2489 Female, age 72, unknown 28.8
Septal nuclei
nTPM: 31.7
1960 Male, age 74, unknown 43.2
2629 Female, age 94, right hemisphere 33.8
2059 Female, age 85, both hemispheres 32.5
2009 Female, age 91, both hemispheres 31.2
2031 Female, age 72, unknown 30.7
2199 Male, age 80, right hemisphere 25.6
2394 Male, age 61, left hemisphere 24.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 85.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.5
Samples: 246

Max nTPM: 174.9
Min nTPM: 11.6
Std nTPM: 33.2
Median nTPM: 62.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 174.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 149.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 140.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 139.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 130.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 129.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 128.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 128.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 125.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 125.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 124.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 85.3
Samples: 246

Max nTPM: 224.5
Min nTPM: 10.1
Std nTPM: 39.2
Median nTPM: 89.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 224.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 194.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 172.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 172.1
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 171.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 167.1
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 166.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 152.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 150.5
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 142.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 141.1
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Brain - Putamen (basal ganglia)
Average nTPM: 52.8
Samples: 205

Max nTPM: 158.3
Min nTPM: 10.5
Std nTPM: 31.7
Median nTPM: 47.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 158.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 123.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 122.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 122.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 121.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 121.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 118.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 118.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 116.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 113.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 113.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.4
FF:10164-103B2 76 years, female 52.4
Globus pallidus
Scaled Tags Per Million: 30.9
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 12.1
Nucleus accumbens
Scaled Tags Per Million: 54.5
FF:10037-101F1 23-56 years, mixed 54.5
Putamen
Scaled Tags Per Million: 142.6
FF:10176-103C5 60 years, female 142.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.4
Sample A Female 3.2
Sample B Female 2.9
Sample C Male 2.4
Sample D Male 2.5
Putamen
nTPM: 2.5
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.7
Sample A Female 3.4
Sample B Female 1.7
Sample C Male 2.5
Sample D Male 2.3
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.9
Sample A Female 3.3
Sample B Female 2.9
Sample C Male 4.4
Sample D Male 3.3
Ventral pallidum
nTPM: 3.1
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.7
Sample A Female 2.8
Sample B Female 2.7
Sample C Male 3.6
Sample D Male 3.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 53.3
Min nTPM: 48.4
Sample A Male 48.4
Sample B Male 49.4
Sample C Female 51.8
Sample D Female 53.3
Septum
nTPM: 49.3
Samples: 4

Max nTPM: 56.7
Min nTPM: 44.0
Sample A Male 51.3
Sample B Male 45.2
Sample C Female 44.0
Sample D Female 56.7
Ventral forebrain
nTPM: 47.7
Samples: 4

Max nTPM: 50.6
Min nTPM: 44.7
Sample A Male 48.7
Sample B Male 44.7
Sample C Female 46.6
Sample D Female 50.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.9
75042253 Antisense, RP_060412_02_C07, Mouse strain C57BL/6J (56 days, male) 5.9
532647 Antisense, RP_040825_01_A02, Mouse strain C57BL/6J (56 days, male) 3.9
Pallidum
Expression energy: 4.4
75042253 Antisense, RP_060412_02_C07, Mouse strain C57BL/6J (56 days, male) 5.5
532647 Antisense, RP_040825_01_A02, Mouse strain C57BL/6J (56 days, male) 3.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.