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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:54.6 nTPM
HPA:54.6 nTPM
GTEx:65.6 nTPM
FANTOM5:77.1 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:77.7 nTPM
Allen mouse:11.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018845Antibody HPA056875
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Hippocampus
nTPM: 46.0
1898 Male, age 80, left hemisphere 61.7
2621 Female, age 67, right hemisphere 57.3
1855 Male, age 76, left hemisphere 50.7
1911 Female, age 85, right hemisphere 38.9
2148 Female, age 91, left hemisphere 37.5
2529 Female, age 94, left hemisphere 30.2
Dentate gyrus
nTPM: 44.4
2010 Male, age 76, both hemispheres 61.4
1927 Female, age 91, both hemispheres 51.0
2530 Female, age 94, left hemisphere 48.1
2246 Female, age 85, both hemispheres 40.4
2528 Male, age 74, both hemispheres 33.2
2531 Female, age 67, both hemispheres 32.2
Entorhinal gyrus
nTPM: 31.6
2613 Female, age 94, left hemisphere 34.9
1938 Female, age 85, left hemisphere 34.4
2764 Male, age 80, right hemisphere 33.8
1787 Male, age 76, left hemisphere 30.9
2117 Female, age 91, right hemisphere 28.0
2686 Male, age 75, right hemisphere 27.6
Hippocampus, CA1
nTPM: 54.6
2749 Male, age 80, left hemisphere 101.8
1873 Female, age 85, both hemispheres 59.9
2527 Male, age 74, both hemispheres 43.2
2082 Female, age 91, right hemisphere 36.3
2045 Male, age 76, both hemispheres 31.5
Hippocampus, CA2
nTPM: 44.9
1963 Male, age 80, left hemisphere 74.2
1892 Male, age 76, both hemispheres 56.9
2249 Male, age 74, both hemispheres 36.4
2113 Female, age 91, right hemisphere 34.8
2437 Female, age 94, left hemisphere 33.9
1940 Female, age 85, left hemisphere 33.2
Hippocampus, CA3
nTPM: 44.8
2137 Male, age 80, left hemisphere 74.0
1867 Male, age 76, both hemispheres 41.9
2861 Female, age 67, both hemispheres 41.9
2436 Male, age 74, both hemispheres 41.4
2620 Female, age 94, left hemisphere 37.5
1891 Female, age 85, both hemispheres 32.4
Parahippocampal cortex
nTPM: 32.9
2245 Female, age 91, both hemispheres 40.8
1850 Male, age 80, both hemispheres 35.4
2018 Male, age 76, both hemispheres 34.9
1933 Female, age 85, both hemispheres 34.4
2250 Female, age 67, right hemisphere 33.1
1990 Female, age 91, right hemisphere 31.4
2622 Female, age 67, right hemisphere 30.1
2692 Male, age 74, both hemispheres 30.1
2693 Female, age 94, both hemispheres 30.1
2532 Female, age 72, left hemisphere 29.0
Perirhinal gyrus
nTPM: 34.7
1847 Female, age 91, left hemisphere 42.6
1794 Male, age 80, right hemisphere 36.0
2521 Female, age 94, right hemisphere 34.5
1841 Female, age 85, right hemisphere 31.2
2848 Male, age 76, right hemisphere 29.1
Subiculum
nTPM: 33.7
1901 Male, age 80, both hemispheres 46.1
2042 Male, age 76, both hemispheres 37.3
2438 Female, age 94, left hemisphere 32.0
1977 Female, age 85, both hemispheres 31.0
2729 Female, age 91, right hemisphere 28.4
2619 Male, age 74, both hemispheres 27.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 65.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.6
Samples: 197

Max nTPM: 291.7
Min nTPM: 11.0
Std nTPM: 52.4
Median nTPM: 46.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 291.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 241.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 226.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 222.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 194.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 181.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 177.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 171.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 170.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 170.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 170.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.1
FF:10169-103B7 60 years, female 127.6
FF:10153-102I9 76 years, female 26.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.3
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.7
Sample A Female 4.1
Sample B Female 3.5
Sample C Male 2.7
Sample D Male 2.7
Entorhinal cortex
nTPM: 2.4
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Female 2.2
Sample B Female 2.2
Sample C Male 3.1
Sample D Male 2.0
Subiculum
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.9
Sample A Female 3.5
Sample B Female 3.3
Sample C Male 2.9
Sample D Male 2.9
Ventral hippocampus
nTPM: 3.7
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.0
Sample A Female 3.8
Sample B Female 3.0
Sample C Male 4.3
Sample D Male 3.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.3
Samples: 4

Max nTPM: 56.7
Min nTPM: 50.8
Sample A Male 54.3
Sample B Male 50.8
Sample C Female 55.2
Sample D Female 56.7
Hippocampal formation
nTPM: 77.7
Samples: 4

Max nTPM: 89.8
Min nTPM: 68.4
Sample A Male 72.9
Sample B Male 79.6
Sample C Female 89.8
Sample D Female 68.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.6
532647 Antisense, RP_040825_01_A02, Mouse strain C57BL/6J (56 days, male) 13.2
75042253 Antisense, RP_060412_02_C07, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.