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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:328.2 nTPM
HPA:328.2 nTPM
GTEx:199.7 nTPM
FANTOM5:616.7 Scaled Tags Per Million
Pig:508.9 nTPM
Mouse:27.0 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 328.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 270.3
2019 Male, age 18, unknown 293.6
1870 Female, age 42, unknown 281.4
2666 Male, age 74, left hemisphere 278.6
2828 Female, age 72, unknown 274.8
1830 Male, age 51, unknown 274.4
1833 Male, age 53, unknown 273.8
2411 Female, age 72, unknown 262.3
1827 Male, age 72, unknown 259.9
2219 Male, age 76, both hemispheres 253.6
2586 Male, age 75, left hemisphere 250.7
Dorsal raphe nucleus
nTPM: 310.1
2016 Female, age 72, unknown 361.8
2298 Female, age 72, unknown 332.1
1828 Male, age 53, unknown 305.1
2047 Male, age 72, unknown 281.0
2750 Male, age 76, both hemispheres 270.3
Inferior colliculus
nTPM: 274.2
1890 Male, age 53, unknown 299.2
2097 Female, age 72, unknown 270.4
1848 Female, age 42, unknown 263.6
2849 Male, age 72, unknown 263.4
Median raphe nucleus
nTPM: 272.7
2220 Male, age 76, midline 272.7
Pedunculopontine tegmental nucleus
nTPM: 295.4
2338 Male, age 61, both hemispheres 360.6
2334 Male, age 80, both hemispheres 270.4
1921 Female, age 85, both hemispheres 255.1
Periaquaductal grey, anterior
nTPM: 297.8
1795 Male, age 51, unknown 332.7
2502 Female, age 75, unknown 286.0
1947 Male, age 18, unknown 274.6
Periaquaductal grey, dorsal
nTPM: 312.2
2850 Male, age 76, both hemispheres 375.9
1831 Male, age 72, unknown 326.6
1840 Male, age 53, unknown 274.2
2464 Female, age 72, unknown 271.9
Periaquaductal grey, lateral
nTPM: 328.2
2272 Male, age 74, both hemispheres 364.2
2140 Male, age 76, both hemispheres 329.1
2053 Male, age 18, unknown 291.4
Pretectal area
nTPM: 279.0
2273 Male, age 74, both hemispheres 352.0
2224 Female, age 72, unknown 292.5
2316 Male, age 76, right hemisphere 280.5
2825 Male, age 18, unknown 276.7
1817 Female, age 42, unknown 272.2
1815 Male, age 53, unknown 270.1
2667 Female, age 75, unknown 267.8
2407 Male, age 75, both hemispheres 267.0
2007 Male, age 72, unknown 263.9
1944 Female, age 72, unknown 263.6
1816 Male, age 51, unknown 263.2
Red nucleus
nTPM: 285.5
2785 Male, age 18, unknown 295.8
2725 Female, age 75, unknown 291.6
2769 Male, age 72, unknown 290.7
2227 Male, age 72, unknown 290.4
1821 Female, age 72, unknown 288.1
1904 Male, age 53, unknown 287.6
1954 Female, age 42, unknown 286.7
2584 Male, age 75, left hemisphere 286.1
1865 Male, age 51, unknown 284.8
2503 Female, age 72, unknown 278.0
2588 Male, age 74, left hemisphere 273.4
2823 Male, age 76, right hemisphere 272.7
Substantia nigra
nTPM: 281.1
2590 Female, age 75, unknown 302.9
2665 Male, age 74, both hemispheres 298.5
2699 Male, age 18, unknown 294.7
1851 Male, age 51, unknown 292.0
2583 Male, age 75, right hemisphere 282.0
2409 Female, age 72, unknown 272.8
1941 Male, age 53, unknown 270.7
1916 Female, age 42, unknown 267.8
2241 Male, age 72, unknown 265.4
1889 Female, age 72, unknown 264.6
Superior colliculus
nTPM: 289.1
1995 Male, age 72, unknown 370.9
1913 Female, age 42, unknown 319.6
2587 Male, age 74, left hemisphere 300.3
2087 Female, age 72, unknown 285.5
1796 Male, age 53, unknown 273.8
2668 Female, age 75, unknown 272.9
2261 Male, age 18, unknown 271.0
2664 Male, age 75, both hemispheres 269.9
1839 Male, age 51, unknown 266.8
1895 Male, age 76, right hemisphere 260.3
Ventral tegmental area
nTPM: 293.6
1915 Female, age 42, unknown 314.2
2223 Female, age 72, unknown 311.8
2021 Male, age 53, unknown 307.4
1942 Male, age 51, unknown 280.3
2218 Male, age 76, both hemispheres 276.5
2410 Female, age 72, unknown 271.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 199.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.7
Samples: 139

Max nTPM: 1131.4
Min nTPM: 59.3
Std nTPM: 147.2
Median nTPM: 162.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1131.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 797.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 745.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 734.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 592.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 510.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 392.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 378.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 349.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 341.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 334.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 616.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 616.7
FF:10158-103A5 76 years, female 616.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 508.9
Pig sample Sample description nTPM
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 142.0
Min nTPM: 46.3
Sample A Female 142.0
Sample B Female 88.4
Sample C Male 92.3
Sample D Male 46.3
Periaqueductal gray
nTPM: 139.5
Samples: 3

Max nTPM: 169.5
Min nTPM: 117.9
Sample B Female 131.2
Sample C Male 169.5
Sample D Male 117.9
Substantia nigra
nTPM: 227.6
Samples: 4

Max nTPM: 568.9
Min nTPM: 66.2
Sample A Female 157.7
Sample B Female 568.9
Sample C Male 66.2
Sample D Male 117.5
Superior colliculi
nTPM: 508.9
Samples: 4

Max nTPM: 1287.7
Min nTPM: 88.3
Sample A Female 570.6
Sample B Female 1287.7
Sample C Male 88.3
Sample D Male 88.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 33.6
Min nTPM: 23.5
Sample A Male 33.6
Sample B Male 25.4
Sample C Female 23.5
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
79677371 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 3.3
79677375 Antisense, RP_071218_02_C11, Mouse strain C57BL/6J (56 days, male) 2.9
1310 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 1.3
79907904 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 1.2
1309 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.