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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:337.5 nTPM
HPA:337.5 nTPM
GTEx:321.4 nTPM
FANTOM5:362.3 Scaled Tags Per Million
Pig:231.6 nTPM
Mouse:36.6 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001762Antibody CAB000080Antibody CAB058687
Glial cells LowMediumNot detected
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 337.5
Sample id Sample description nTPM
Hippocampus
nTPM: 333.3
2529 Female, age 94, left hemisphere 367.3
2621 Female, age 67, right hemisphere 350.2
1911 Female, age 85, right hemisphere 340.6
1898 Male, age 80, left hemisphere 321.9
1855 Male, age 76, left hemisphere 311.7
2148 Female, age 91, left hemisphere 308.2
Dentate gyrus
nTPM: 326.7
2010 Male, age 76, both hemispheres 373.6
2530 Female, age 94, left hemisphere 326.7
2528 Male, age 74, both hemispheres 325.7
2531 Female, age 67, both hemispheres 321.9
2246 Female, age 85, both hemispheres 316.9
1927 Female, age 91, both hemispheres 295.2
Entorhinal gyrus
nTPM: 321.3
2117 Female, age 91, right hemisphere 372.6
2686 Male, age 75, right hemisphere 334.1
1787 Male, age 76, left hemisphere 323.1
1938 Female, age 85, left hemisphere 317.2
2613 Female, age 94, left hemisphere 291.8
2764 Male, age 80, right hemisphere 288.7
Hippocampus, CA1
nTPM: 316.4
2082 Female, age 91, right hemisphere 342.6
2527 Male, age 74, both hemispheres 320.5
1873 Female, age 85, both hemispheres 318.2
2045 Male, age 76, both hemispheres 304.2
2749 Male, age 80, left hemisphere 296.2
Hippocampus, CA2
nTPM: 334.6
1940 Female, age 85, left hemisphere 368.8
2249 Male, age 74, both hemispheres 359.0
2113 Female, age 91, right hemisphere 335.5
2437 Female, age 94, left hemisphere 326.3
1963 Male, age 80, left hemisphere 311.1
1892 Male, age 76, both hemispheres 307.0
Hippocampus, CA3
nTPM: 337.5
2436 Male, age 74, both hemispheres 388.2
1867 Male, age 76, both hemispheres 360.3
2861 Female, age 67, both hemispheres 330.4
2137 Male, age 80, left hemisphere 323.8
1891 Female, age 85, both hemispheres 318.2
2620 Female, age 94, left hemisphere 303.9
Parahippocampal cortex
nTPM: 314.0
2018 Male, age 76, both hemispheres 330.1
1990 Female, age 91, right hemisphere 328.6
2622 Female, age 67, right hemisphere 322.6
2250 Female, age 67, right hemisphere 322.4
2245 Female, age 91, both hemispheres 319.5
2692 Male, age 74, both hemispheres 313.2
1933 Female, age 85, both hemispheres 309.2
2532 Female, age 72, left hemisphere 306.9
2693 Female, age 94, both hemispheres 296.0
1850 Male, age 80, both hemispheres 291.3
Perirhinal gyrus
nTPM: 310.8
1841 Female, age 85, right hemisphere 340.1
2521 Female, age 94, right hemisphere 327.0
1794 Male, age 80, right hemisphere 303.6
1847 Female, age 91, left hemisphere 297.6
2848 Male, age 76, right hemisphere 285.6
Subiculum
nTPM: 325.2
2042 Male, age 76, both hemispheres 356.8
2619 Male, age 74, both hemispheres 344.8
2438 Female, age 94, left hemisphere 318.6
2729 Female, age 91, right hemisphere 318.2
1977 Female, age 85, both hemispheres 307.0
1901 Male, age 80, both hemispheres 305.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 321.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 321.4
Samples: 197

Max nTPM: 1345.9
Min nTPM: 63.4
Std nTPM: 182.0
Median nTPM: 279.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 1345.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1214.9
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 1199.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 912.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 754.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 740.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 722.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 694.4
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 691.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 690.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 621.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 362.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 362.3
FF:10153-102I9 76 years, female 534.2
FF:10169-103B7 60 years, female 190.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 231.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 204.0
Samples: 4

Max nTPM: 269.9
Min nTPM: 108.4
Sample A Female 257.9
Sample B Female 179.8
Sample C Male 269.9
Sample D Male 108.4
Entorhinal cortex
nTPM: 172.6
Samples: 4

Max nTPM: 255.3
Min nTPM: 73.0
Sample A Female 255.3
Sample B Female 171.3
Sample C Male 190.6
Sample D Male 73.0
Subiculum
nTPM: 231.0
Samples: 4

Max nTPM: 301.4
Min nTPM: 169.8
Sample A Female 225.1
Sample B Female 169.8
Sample C Male 227.8
Sample D Male 301.4
Ventral hippocampus
nTPM: 231.6
Samples: 4

Max nTPM: 380.8
Min nTPM: 153.7
Sample A Female 203.6
Sample B Female 153.7
Sample C Male 380.8
Sample D Male 188.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 36.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 35.6
Min nTPM: 27.7
Sample A Male 35.6
Sample B Male 27.7
Sample C Female 33.6
Sample D Female 29.7
Hippocampal formation
nTPM: 36.6
Samples: 4

Max nTPM: 40.6
Min nTPM: 32.3
Sample A Male 32.3
Sample B Male 34.2
Sample C Female 39.1
Sample D Female 40.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
79677375 Antisense, RP_071218_02_C11, Mouse strain C57BL/6J (56 days, male) 3.0
79677371 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 2.9
1310 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 1.1
79907904 Antisense, RP_071218_02_C05, Mouse strain C57BL/6J (56 days, male) 1.0
1309 Antisense, RP_Baylor_103104, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.