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SNX1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:46.2 nTPM
HPA:46.2 nTPM
GTEx:36.5 nTPM
FANTOM5:116.6 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:79.1 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047373
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 46.2
Sample id Sample description nTPM
Hippocampus
nTPM: 43.1
2529 Female, age 94, left hemisphere 45.6
1911 Female, age 85, right hemisphere 44.5
2148 Female, age 91, left hemisphere 43.7
1855 Male, age 76, left hemisphere 43.2
1898 Male, age 80, left hemisphere 42.9
2621 Female, age 67, right hemisphere 38.9
Dentate gyrus
nTPM: 43.2
2530 Female, age 94, left hemisphere 46.6
2010 Male, age 76, both hemispheres 44.7
2528 Male, age 74, both hemispheres 44.3
2246 Female, age 85, both hemispheres 42.1
2531 Female, age 67, both hemispheres 42.0
1927 Female, age 91, both hemispheres 39.1
Entorhinal gyrus
nTPM: 42.9
2117 Female, age 91, right hemisphere 47.3
2686 Male, age 75, right hemisphere 44.7
1938 Female, age 85, left hemisphere 43.4
2764 Male, age 80, right hemisphere 42.5
2613 Female, age 94, left hemisphere 40.0
1787 Male, age 76, left hemisphere 39.7
Hippocampus, CA1
nTPM: 43.6
2045 Male, age 76, both hemispheres 45.1
2749 Male, age 80, left hemisphere 44.2
2082 Female, age 91, right hemisphere 43.5
2527 Male, age 74, both hemispheres 43.5
1873 Female, age 85, both hemispheres 41.9
Hippocampus, CA2
nTPM: 43.3
1963 Male, age 80, left hemisphere 47.4
2113 Female, age 91, right hemisphere 43.8
2249 Male, age 74, both hemispheres 43.7
2437 Female, age 94, left hemisphere 42.8
1892 Male, age 76, both hemispheres 41.5
1940 Female, age 85, left hemisphere 40.5
Hippocampus, CA3
nTPM: 42.4
2137 Male, age 80, left hemisphere 47.1
1867 Male, age 76, both hemispheres 45.1
1891 Female, age 85, both hemispheres 44.4
2620 Female, age 94, left hemisphere 40.9
2861 Female, age 67, both hemispheres 40.6
2436 Male, age 74, both hemispheres 36.0
Parahippocampal cortex
nTPM: 41.6
2532 Female, age 72, left hemisphere 44.2
1933 Female, age 85, both hemispheres 44.1
2692 Male, age 74, both hemispheres 43.3
2245 Female, age 91, both hemispheres 42.3
2018 Male, age 76, both hemispheres 42.2
1850 Male, age 80, both hemispheres 41.4
1990 Female, age 91, right hemisphere 40.9
2693 Female, age 94, both hemispheres 40.6
2250 Female, age 67, right hemisphere 39.9
2622 Female, age 67, right hemisphere 37.1
Perirhinal gyrus
nTPM: 38.4
2521 Female, age 94, right hemisphere 41.7
2848 Male, age 76, right hemisphere 39.7
1847 Female, age 91, left hemisphere 37.2
1841 Female, age 85, right hemisphere 36.9
1794 Male, age 80, right hemisphere 36.6
Subiculum
nTPM: 46.2
2042 Male, age 76, both hemispheres 49.9
1901 Male, age 80, both hemispheres 48.6
2729 Female, age 91, right hemisphere 46.6
2438 Female, age 94, left hemisphere 45.7
1977 Female, age 85, both hemispheres 45.1
2619 Male, age 74, both hemispheres 41.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.5
Samples: 197

Max nTPM: 75.8
Min nTPM: 14.0
Std nTPM: 11.7
Median nTPM: 35.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 75.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 68.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 67.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 64.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 62.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 61.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 61.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 60.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 60.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 59.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 59.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 116.6
FF:10153-102I9 76 years, female 119.1
FF:10169-103B7 60 years, female 114.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 43.6
Samples: 4

Max nTPM: 61.2
Min nTPM: 24.6
Sample A Female 61.2
Sample B Female 36.2
Sample C Male 52.2
Sample D Male 24.6
Entorhinal cortex
nTPM: 29.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 25.1
Sample A Female 29.2
Sample B Female 34.0
Sample C Male 30.4
Sample D Male 25.1
Subiculum
nTPM: 31.3
Samples: 4

Max nTPM: 36.1
Min nTPM: 27.9
Sample A Female 36.1
Sample B Female 30.3
Sample C Male 27.9
Sample D Male 30.8
Ventral hippocampus
nTPM: 35.9
Samples: 4

Max nTPM: 39.8
Min nTPM: 27.2
Sample A Female 39.8
Sample B Female 27.2
Sample C Male 37.0
Sample D Male 39.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.0
Samples: 4

Max nTPM: 78.3
Min nTPM: 56.0
Sample A Male 66.7
Sample B Male 67.1
Sample C Female 78.3
Sample D Female 56.0
Hippocampal formation
nTPM: 79.1
Samples: 4

Max nTPM: 81.5
Min nTPM: 74.5
Sample A Male 81.5
Sample B Male 74.5
Sample C Female 81.0
Sample D Female 79.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
69885606 Antisense, RP_050512_03_A02, Mouse strain C57BL/6J (56 days, male) 5.5

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