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RANBP3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA:34.9 nTPM
GTEx:30.4 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:32.6 nTPM
Mouse:38.1 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
2586 Male, age 75, left hemisphere 36.4
1833 Male, age 53, unknown 32.1
1827 Male, age 72, unknown 31.6
1870 Female, age 42, unknown 31.4
2828 Female, age 72, unknown 31.4
2411 Female, age 72, unknown 31.1
2666 Male, age 74, left hemisphere 29.0
1830 Male, age 51, unknown 28.9
2219 Male, age 76, both hemispheres 28.3
2019 Male, age 18, unknown 27.3
Dorsal raphe nucleus
nTPM: 28.3
1828 Male, age 53, unknown 29.7
2047 Male, age 72, unknown 29.4
2750 Male, age 76, both hemispheres 29.4
2298 Female, age 72, unknown 27.7
2016 Female, age 72, unknown 25.4
Inferior colliculus
nTPM: 29.5
2849 Male, age 72, unknown 32.1
1848 Female, age 42, unknown 29.6
2097 Female, age 72, unknown 29.2
1890 Male, age 53, unknown 26.9
Median raphe nucleus
nTPM: 29.5
2220 Male, age 76, midline 29.5
Pedunculopontine tegmental nucleus
nTPM: 27.7
2334 Male, age 80, both hemispheres 29.1
1921 Female, age 85, both hemispheres 27.2
2338 Male, age 61, both hemispheres 26.7
Periaquaductal grey, anterior
nTPM: 34.9
1947 Male, age 18, unknown 36.9
2502 Female, age 75, unknown 36.4
1795 Male, age 51, unknown 31.4
Periaquaductal grey, dorsal
nTPM: 28.3
2464 Female, age 72, unknown 29.2
1840 Male, age 53, unknown 28.7
1831 Male, age 72, unknown 27.8
2850 Male, age 76, both hemispheres 27.6
Periaquaductal grey, lateral
nTPM: 28.3
2272 Male, age 74, both hemispheres 28.8
2053 Male, age 18, unknown 28.7
2140 Male, age 76, both hemispheres 27.3
Pretectal area
nTPM: 30.2
2407 Male, age 75, both hemispheres 32.2
1944 Female, age 72, unknown 31.8
2007 Male, age 72, unknown 31.8
1816 Male, age 51, unknown 31.6
2825 Male, age 18, unknown 31.1
1817 Female, age 42, unknown 30.9
2316 Male, age 76, right hemisphere 29.8
2667 Female, age 75, unknown 29.8
2224 Female, age 72, unknown 28.3
1815 Male, age 53, unknown 27.5
2273 Male, age 74, both hemispheres 27.5
Red nucleus
nTPM: 30.2
2584 Male, age 75, left hemisphere 32.4
1865 Male, age 51, unknown 31.9
1954 Female, age 42, unknown 31.8
2503 Female, age 72, unknown 31.5
2227 Male, age 72, unknown 31.2
2588 Male, age 74, left hemisphere 30.8
1904 Male, age 53, unknown 30.2
2769 Male, age 72, unknown 29.4
1821 Female, age 72, unknown 29.2
2785 Male, age 18, unknown 29.1
2725 Female, age 75, unknown 28.9
2823 Male, age 76, right hemisphere 25.8
Substantia nigra
nTPM: 30.7
1916 Female, age 42, unknown 33.4
1851 Male, age 51, unknown 32.5
2699 Male, age 18, unknown 31.7
1941 Male, age 53, unknown 31.5
2583 Male, age 75, right hemisphere 30.8
1889 Female, age 72, unknown 30.3
2409 Female, age 72, unknown 30.1
2665 Male, age 74, both hemispheres 30.0
2590 Female, age 75, unknown 29.4
2241 Male, age 72, unknown 27.3
Superior colliculus
nTPM: 30.2
2664 Male, age 75, both hemispheres 33.1
1796 Male, age 53, unknown 32.2
2668 Female, age 75, unknown 31.7
1839 Male, age 51, unknown 30.8
2261 Male, age 18, unknown 30.6
2087 Female, age 72, unknown 30.3
1913 Female, age 42, unknown 29.3
2587 Male, age 74, left hemisphere 29.1
1995 Male, age 72, unknown 27.7
1895 Male, age 76, right hemisphere 27.5
Ventral tegmental area
nTPM: 30.3
2218 Male, age 76, both hemispheres 33.0
1915 Female, age 42, unknown 30.8
2410 Female, age 72, unknown 30.1
2021 Male, age 53, unknown 29.6
1942 Male, age 51, unknown 29.5
2223 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 39.6
Min nTPM: 20.8
Std nTPM: 3.6
Median nTPM: 30.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 39.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 38.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 37.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 37.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 36.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 35.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.7
FF:10158-103A5 76 years, female 45.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.6
Pig sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 29.7
Sample A Female 36.9
Sample B Female 29.7
Sample C Male 31.9
Sample D Male 31.8
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 31.6
Min nTPM: 28.2
Sample B Female 29.8
Sample C Male 31.6
Sample D Male 28.2
Substantia nigra
nTPM: 32.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 29.0
Sample A Female 33.1
Sample B Female 29.0
Sample C Male 35.1
Sample D Male 30.8
Superior colliculi
nTPM: 32.3
Samples: 4

Max nTPM: 35.5
Min nTPM: 30.1
Sample A Female 35.5
Sample B Female 30.1
Sample C Male 30.2
Sample D Male 33.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 39.3
Min nTPM: 36.3
Sample A Male 39.3
Sample B Male 36.3
Sample C Female 37.7
Sample D Female 39.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71493044 Antisense, RP_050913_02_A09, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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