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RNF19A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:19.2 nTPM
FANTOM5:52.5 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:15.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.0
1870 Female, age 42, unknown 25.1
2019 Male, age 18, unknown 24.8
2586 Male, age 75, left hemisphere 24.1
2828 Female, age 72, unknown 22.9
1830 Male, age 51, unknown 22.4
2411 Female, age 72, unknown 22.0
1827 Male, age 72, unknown 21.7
2666 Male, age 74, left hemisphere 21.1
1833 Male, age 53, unknown 20.5
2219 Male, age 76, both hemispheres 14.9
Dorsal raphe nucleus
nTPM: 29.1
2016 Female, age 72, unknown 35.4
2298 Female, age 72, unknown 32.6
2047 Male, age 72, unknown 28.7
1828 Male, age 53, unknown 27.6
2750 Male, age 76, both hemispheres 21.4
Inferior colliculus
nTPM: 25.4
2097 Female, age 72, unknown 26.7
1848 Female, age 42, unknown 25.8
2849 Male, age 72, unknown 25.3
1890 Male, age 53, unknown 23.9
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Pedunculopontine tegmental nucleus
nTPM: 20.9
1921 Female, age 85, both hemispheres 22.5
2334 Male, age 80, both hemispheres 20.3
2338 Male, age 61, both hemispheres 20.0
Periaquaductal grey, anterior
nTPM: 25.5
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 26.1
1947 Male, age 18, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 43.7
1840 Male, age 53, unknown 36.7
1831 Male, age 72, unknown 35.2
2464 Female, age 72, unknown 28.4
Periaquaductal grey, lateral
nTPM: 33.2
2140 Male, age 76, both hemispheres 45.3
2272 Male, age 74, both hemispheres 28.0
2053 Male, age 18, unknown 26.4
Pretectal area
nTPM: 25.0
2667 Female, age 75, unknown 33.8
2224 Female, age 72, unknown 30.8
2273 Male, age 74, both hemispheres 30.5
1817 Female, age 42, unknown 24.7
1944 Female, age 72, unknown 24.1
2316 Male, age 76, right hemisphere 24.0
2825 Male, age 18, unknown 23.9
1815 Male, age 53, unknown 23.8
1816 Male, age 51, unknown 20.3
2407 Male, age 75, both hemispheres 20.3
2007 Male, age 72, unknown 19.1
Red nucleus
nTPM: 22.1
1954 Female, age 42, unknown 25.0
2725 Female, age 75, unknown 24.9
1821 Female, age 72, unknown 24.8
1865 Male, age 51, unknown 23.0
2503 Female, age 72, unknown 22.9
2785 Male, age 18, unknown 22.9
2769 Male, age 72, unknown 21.4
2227 Male, age 72, unknown 21.1
2588 Male, age 74, left hemisphere 21.1
2823 Male, age 76, right hemisphere 20.2
1904 Male, age 53, unknown 19.4
2584 Male, age 75, left hemisphere 18.9
Substantia nigra
nTPM: 24.4
2699 Male, age 18, unknown 31.4
1916 Female, age 42, unknown 27.2
2241 Male, age 72, unknown 26.4
1851 Male, age 51, unknown 24.9
1941 Male, age 53, unknown 24.7
1889 Female, age 72, unknown 23.8
2583 Male, age 75, right hemisphere 22.9
2590 Female, age 75, unknown 21.9
2665 Male, age 74, both hemispheres 21.2
2409 Female, age 72, unknown 19.9
Superior colliculus
nTPM: 23.3
1995 Male, age 72, unknown 29.9
2664 Male, age 75, both hemispheres 28.9
1913 Female, age 42, unknown 25.7
1796 Male, age 53, unknown 24.9
2087 Female, age 72, unknown 23.9
1839 Male, age 51, unknown 22.6
2587 Male, age 74, left hemisphere 21.5
2261 Male, age 18, unknown 20.1
1895 Male, age 76, right hemisphere 19.9
2668 Female, age 75, unknown 15.6
Ventral tegmental area
nTPM: 27.2
2021 Male, age 53, unknown 32.6
1942 Male, age 51, unknown 29.6
1915 Female, age 42, unknown 28.6
2218 Male, age 76, both hemispheres 25.7
2223 Female, age 72, unknown 24.7
2410 Female, age 72, unknown 21.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 45.7
Min nTPM: 9.4
Std nTPM: 6.7
Median nTPM: 17.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 42.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 38.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 36.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 34.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 32.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 31.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 30.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.5
FF:10158-103A5 76 years, female 52.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 20.2
Sample A Female 32.2
Sample B Female 22.1
Sample C Male 27.5
Sample D Male 20.2
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 23.0
Min nTPM: 18.7
Sample B Female 19.3
Sample C Male 23.0
Sample D Male 18.7
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 27.4
Min nTPM: 18.6
Sample A Female 27.4
Sample B Female 25.1
Sample C Male 23.7
Sample D Male 18.6
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.0
Sample A Female 22.9
Sample B Female 22.2
Sample C Male 28.2
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 14.7
Sample A Male 14.7
Sample B Male 15.7
Sample C Female 15.8
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70565183 Antisense, RP_050623_04_D09, Mouse strain C57BL/6J (56 days, male) 0.2
73931414 Antisense, RP_051214_04_E06, Mouse strain C57BL/6J (56 days, male) 0.0
70918850 Antisense, RP_050712_04_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.