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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA:46.3 nTPM
GTEx:58.4 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:3.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.5
2828 Female, age 72, unknown 46.6
2666 Male, age 74, left hemisphere 45.3
2586 Male, age 75, left hemisphere 42.0
1830 Male, age 51, unknown 41.6
1870 Female, age 42, unknown 41.6
1827 Male, age 72, unknown 41.4
1833 Male, age 53, unknown 40.9
2019 Male, age 18, unknown 40.1
2411 Female, age 72, unknown 39.5
2219 Male, age 76, both hemispheres 36.4
Dorsal raphe nucleus
nTPM: 46.2
2016 Female, age 72, unknown 51.2
2298 Female, age 72, unknown 48.9
1828 Male, age 53, unknown 46.8
2750 Male, age 76, both hemispheres 42.0
2047 Male, age 72, unknown 41.9
Inferior colliculus
nTPM: 40.4
2849 Male, age 72, unknown 41.2
2097 Female, age 72, unknown 40.5
1848 Female, age 42, unknown 40.0
1890 Male, age 53, unknown 40.0
Median raphe nucleus
nTPM: 40.6
2220 Male, age 76, midline 40.6
Pedunculopontine tegmental nucleus
nTPM: 46.0
2338 Male, age 61, both hemispheres 58.3
2334 Male, age 80, both hemispheres 42.8
1921 Female, age 85, both hemispheres 37.0
Periaquaductal grey, anterior
nTPM: 39.7
1795 Male, age 51, unknown 44.2
1947 Male, age 18, unknown 38.4
2502 Female, age 75, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 46.3
2850 Male, age 76, both hemispheres 49.1
1831 Male, age 72, unknown 47.7
1840 Male, age 53, unknown 45.2
2464 Female, age 72, unknown 43.2
Periaquaductal grey, lateral
nTPM: 45.9
2140 Male, age 76, both hemispheres 47.3
2053 Male, age 18, unknown 46.4
2272 Male, age 74, both hemispheres 44.1
Pretectal area
nTPM: 40.7
2316 Male, age 76, right hemisphere 46.3
2224 Female, age 72, unknown 44.6
2273 Male, age 74, both hemispheres 43.8
2825 Male, age 18, unknown 41.3
1817 Female, age 42, unknown 40.8
1815 Male, age 53, unknown 39.4
2407 Male, age 75, both hemispheres 39.3
1944 Female, age 72, unknown 39.0
2007 Male, age 72, unknown 38.2
2667 Female, age 75, unknown 38.2
1816 Male, age 51, unknown 37.2
Red nucleus
nTPM: 41.7
2823 Male, age 76, right hemisphere 45.8
2503 Female, age 72, unknown 45.0
2725 Female, age 75, unknown 44.9
2584 Male, age 75, left hemisphere 43.4
2227 Male, age 72, unknown 42.6
1865 Male, age 51, unknown 42.2
2769 Male, age 72, unknown 41.0
1904 Male, age 53, unknown 40.6
1821 Female, age 72, unknown 40.1
2785 Male, age 18, unknown 39.4
1954 Female, age 42, unknown 39.2
2588 Male, age 74, left hemisphere 35.8
Substantia nigra
nTPM: 45.9
2590 Female, age 75, unknown 58.8
2699 Male, age 18, unknown 54.2
1916 Female, age 42, unknown 46.7
2583 Male, age 75, right hemisphere 46.4
2665 Male, age 74, both hemispheres 45.1
1851 Male, age 51, unknown 45.0
2409 Female, age 72, unknown 43.1
2241 Male, age 72, unknown 41.3
1941 Male, age 53, unknown 40.6
1889 Female, age 72, unknown 38.3
Superior colliculus
nTPM: 42.8
1995 Male, age 72, unknown 50.9
1913 Female, age 42, unknown 50.8
2587 Male, age 74, left hemisphere 44.0
1796 Male, age 53, unknown 43.0
1839 Male, age 51, unknown 42.4
2664 Male, age 75, both hemispheres 40.8
2087 Female, age 72, unknown 40.1
2261 Male, age 18, unknown 39.7
2668 Female, age 75, unknown 38.5
1895 Male, age 76, right hemisphere 38.1
Ventral tegmental area
nTPM: 46.0
2021 Male, age 53, unknown 55.8
1915 Female, age 42, unknown 47.2
2223 Female, age 72, unknown 44.0
2410 Female, age 72, unknown 43.9
1942 Male, age 51, unknown 42.7
2218 Male, age 76, both hemispheres 42.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.4
Samples: 139

Max nTPM: 214.1
Min nTPM: 8.5
Std nTPM: 38.0
Median nTPM: 50.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 214.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 193.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 185.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 159.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 151.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 148.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 146.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 135.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 132.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 130.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 126.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.5
FF:10158-103A5 76 years, female 16.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.7
Sample A Female 4.3
Sample B Female 3.8
Sample C Male 3.7
Sample D Male 3.8
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.2
Min nTPM: 3.6
Sample B Female 4.2
Sample C Male 3.6
Sample D Male 4.0
Substantia nigra
nTPM: 5.1
Samples: 4

Max nTPM: 8.4
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 8.4
Sample C Male 3.8
Sample D Male 4.4
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 3.1
Sample A Female 4.8
Sample B Female 11.3
Sample C Male 3.4
Sample D Male 3.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.0
Sample A Male 3.5
Sample B Male 3.5
Sample C Female 2.0
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978490 Antisense, RP_040923_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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