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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.9 nTPM
HPA:119.9 nTPM
GTEx:121.9 nTPM
FANTOM5:92.8 Scaled Tags Per Million
Pig:99.4 nTPM
Mouse:274.8 nTPM
Allen mouse:8.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 119.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 101.4
1857 Female, age 85, left hemisphere 106.0
2846 Female, age 79, unknown 106.0
1781 Male, age 74, unknown 105.5
2288 Male, age 75, left hemisphere 103.4
2481 Female, age 94, left hemisphere 101.8
2290 Female, age 72, unknown 100.9
1854 Male, age 80, left hemisphere 100.6
2289 Male, age 61, right hemisphere 86.8
Claustrum
nTPM: 103.8
2198 Male, age 80, both hemispheres 115.4
1956 Male, age 74, unknown 107.6
2491 Male, age 75, both hemispheres 106.6
2392 Female, age 94, both hemispheres 105.2
2568 Male, age 61, both hemispheres 104.7
2284 Female, age 91, both hemispheres 103.3
2196 Female, age 79, unknown 101.3
2645 Female, age 72, unknown 97.3
2292 Female, age 85, both hemispheres 93.0
Globus pallidus, externus
nTPM: 94.5
2395 Male, age 75, both hemispheres 108.1
2772 Female, age 79, unknown 104.8
1996 Male, age 80, right hemisphere 94.7
2646 Male, age 61, right hemisphere 85.9
2567 Female, age 72, unknown 79.1
Globus pallidus, internus
nTPM: 94.8
2287 Male, age 75, right hemisphere 109.4
2483 Female, age 94, right hemisphere 99.7
2778 Female, age 91, both hemispheres 96.7
2037 Male, age 80, right hemisphere 95.9
1818 Male, age 74, unknown 92.9
2566 Female, age 72, unknown 87.1
2111 Female, age 85, right hemisphere 81.8
Nucleus accumbens
nTPM: 103.0
1856 Female, age 91, right hemisphere 114.6
1783 Male, age 74, unknown 110.0
2286 Male, age 75, left hemisphere 105.0
1806 Female, age 85, left hemisphere 104.9
2698 Female, age 72, unknown 101.3
2824 Male, age 61, right hemisphere 100.5
2391 Female, age 94, left hemisphere 96.6
2732 Male, age 80, right hemisphere 91.4
Nucleus basalis of Meynert
nTPM: 94.5
2821 Male, age 75, both hemispheres 100.1
2484 Female, age 94, left hemisphere 97.8
2393 Male, age 80, right hemisphere 95.1
2569 Male, age 61, both hemispheres 85.0
Nucleus of the diagonal band
nTPM: 119.9
2775 Male, age 80, right hemisphere 131.0
1812 Female, age 91, both hemispheres 130.5
2029 Male, age 61, right hemisphere 123.5
2195 Female, age 85, both hemispheres 119.4
1979 Male, age 74, unknown 94.9
Olfactory tubercle
nTPM: 115.0
1998 Female, age 91, both hemispheres 131.5
1846 Male, age 80, right hemisphere 119.4
2487 Female, age 94, left hemisphere 110.3
2856 Male, age 75, right hemisphere 98.9
Putamen
nTPM: 99.0
2466 Female, age 79, unknown 110.8
1937 Female, age 91, right hemisphere 106.4
1838 Male, age 80, right hemisphere 102.5
2482 Female, age 94, left hemisphere 101.3
1829 Male, age 74, unknown 98.4
2647 Male, age 75, left hemisphere 90.0
2489 Female, age 72, unknown 83.6
Septal nuclei
nTPM: 110.9
2031 Female, age 72, unknown 137.1
1960 Male, age 74, unknown 135.2
2009 Female, age 91, both hemispheres 114.9
2059 Female, age 85, both hemispheres 105.9
2629 Female, age 94, right hemisphere 102.6
2394 Male, age 61, left hemisphere 92.4
2199 Male, age 80, right hemisphere 88.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 121.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 103.5
Samples: 246

Max nTPM: 222.5
Min nTPM: 50.4
Std nTPM: 29.8
Median nTPM: 101.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 222.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 203.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 202.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 198.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 186.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 176.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 175.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 174.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 174.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 173.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 166.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 121.9
Samples: 246

Max nTPM: 259.1
Min nTPM: 39.1
Std nTPM: 31.7
Median nTPM: 119.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 259.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 213.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 202.9
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 202.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 193.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 193.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 193.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 191.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 183.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 180.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 180.7
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Brain - Putamen (basal ganglia)
Average nTPM: 112.2
Samples: 205

Max nTPM: 191.3
Min nTPM: 62.4
Std nTPM: 28.1
Median nTPM: 108.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 191.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 185.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 178.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 175.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 173.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 173.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 172.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 172.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 169.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 169.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 165.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.6
FF:10164-103B2 76 years, female 87.6
Globus pallidus
Scaled Tags Per Million: 72.6
FF:10175-103C4 60 years, female 92.3
FF:10161-103A8 76 years, female 52.9
Nucleus accumbens
Scaled Tags Per Million: 74.6
FF:10037-101F1 23-56 years, mixed 74.6
Putamen
Scaled Tags Per Million: 92.8
FF:10176-103C5 60 years, female 92.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 99.4
Pig sample Sample description nTPM
Caudate
nTPM: 98.3
Samples: 4

Max nTPM: 116.4
Min nTPM: 80.2
Sample A Female 88.1
Sample B Female 108.6
Sample C Male 116.4
Sample D Male 80.2
Putamen
nTPM: 99.4
Samples: 4

Max nTPM: 129.0
Min nTPM: 80.1
Sample A Female 91.7
Sample B Female 80.1
Sample C Male 129.0
Sample D Male 96.9
Septum
nTPM: 94.4
Samples: 4

Max nTPM: 107.1
Min nTPM: 83.6
Sample A Female 107.1
Sample B Female 83.6
Sample C Male 102.8
Sample D Male 84.2
Ventral pallidum
nTPM: 89.2
Samples: 4

Max nTPM: 104.8
Min nTPM: 75.4
Sample A Female 83.4
Sample B Female 93.2
Sample C Male 104.8
Sample D Male 75.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 274.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 202.5
Samples: 4

Max nTPM: 233.6
Min nTPM: 176.1
Sample A Male 199.0
Sample B Male 233.6
Sample C Female 176.1
Sample D Female 201.2
Septum
nTPM: 274.8
Samples: 4

Max nTPM: 301.4
Min nTPM: 244.1
Sample A Male 301.4
Sample B Male 270.6
Sample C Female 283.0
Sample D Female 244.1
Ventral forebrain
nTPM: 264.5
Samples: 4

Max nTPM: 308.2
Min nTPM: 231.2
Sample A Male 275.0
Sample B Male 231.2
Sample C Female 308.2
Sample D Female 243.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.4
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 8.2
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 6.5
Pallidum
Expression energy: 8.1
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 9.7
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 6.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.