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AP2S1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.9 nTPM
HPA:103.9 nTPM
GTEx:113.8 nTPM
FANTOM5:58.4 Scaled Tags Per Million
Pig:112.3 nTPM
Mouse:178.9 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.4
1827 Male, age 72, unknown 107.6
2019 Male, age 18, unknown 101.2
2666 Male, age 74, left hemisphere 100.4
2411 Female, age 72, unknown 100.1
2586 Male, age 75, left hemisphere 97.8
1870 Female, age 42, unknown 97.1
2828 Female, age 72, unknown 96.8
2219 Male, age 76, both hemispheres 93.1
1833 Male, age 53, unknown 90.4
1830 Male, age 51, unknown 89.9
Dorsal raphe nucleus
nTPM: 102.9
2298 Female, age 72, unknown 119.2
2047 Male, age 72, unknown 105.7
2750 Male, age 76, both hemispheres 99.6
1828 Male, age 53, unknown 99.2
2016 Female, age 72, unknown 90.6
Inferior colliculus
nTPM: 96.2
2097 Female, age 72, unknown 104.3
1890 Male, age 53, unknown 96.0
1848 Female, age 42, unknown 94.5
2849 Male, age 72, unknown 90.0
Median raphe nucleus
nTPM: 99.2
2220 Male, age 76, midline 99.2
Pedunculopontine tegmental nucleus
nTPM: 101.0
1921 Female, age 85, both hemispheres 102.4
2334 Male, age 80, both hemispheres 101.3
2338 Male, age 61, both hemispheres 99.2
Periaquaductal grey, anterior
nTPM: 102.5
1947 Male, age 18, unknown 109.7
1795 Male, age 51, unknown 105.1
2502 Female, age 75, unknown 92.5
Periaquaductal grey, dorsal
nTPM: 92.3
1840 Male, age 53, unknown 96.6
1831 Male, age 72, unknown 91.9
2464 Female, age 72, unknown 90.5
2850 Male, age 76, both hemispheres 90.1
Periaquaductal grey, lateral
nTPM: 95.4
2272 Male, age 74, both hemispheres 103.6
2053 Male, age 18, unknown 93.6
2140 Male, age 76, both hemispheres 89.0
Pretectal area
nTPM: 103.9
2007 Male, age 72, unknown 115.2
1816 Male, age 51, unknown 113.3
1817 Female, age 42, unknown 111.4
1944 Female, age 72, unknown 108.2
1815 Male, age 53, unknown 104.5
2224 Female, age 72, unknown 104.5
2273 Male, age 74, both hemispheres 103.5
2667 Female, age 75, unknown 102.0
2825 Male, age 18, unknown 94.6
2316 Male, age 76, right hemisphere 93.5
2407 Male, age 75, both hemispheres 92.2
Red nucleus
nTPM: 93.9
1821 Female, age 72, unknown 102.2
2725 Female, age 75, unknown 99.2
2785 Male, age 18, unknown 98.5
1954 Female, age 42, unknown 93.3
2503 Female, age 72, unknown 92.5
2584 Male, age 75, left hemisphere 92.5
2769 Male, age 72, unknown 92.4
2588 Male, age 74, left hemisphere 92.2
1904 Male, age 53, unknown 91.6
1865 Male, age 51, unknown 91.3
2227 Male, age 72, unknown 90.9
2823 Male, age 76, right hemisphere 90.5
Substantia nigra
nTPM: 102.4
1916 Female, age 42, unknown 115.5
1851 Male, age 51, unknown 110.9
1889 Female, age 72, unknown 110.0
1941 Male, age 53, unknown 108.6
2241 Male, age 72, unknown 99.7
2665 Male, age 74, both hemispheres 98.4
2583 Male, age 75, right hemisphere 97.5
2409 Female, age 72, unknown 96.4
2590 Female, age 75, unknown 94.1
2699 Male, age 18, unknown 92.5
Superior colliculus
nTPM: 98.3
2668 Female, age 75, unknown 112.4
1796 Male, age 53, unknown 105.5
2587 Male, age 74, left hemisphere 101.5
2261 Male, age 18, unknown 101.2
2087 Female, age 72, unknown 100.2
1895 Male, age 76, right hemisphere 98.8
1839 Male, age 51, unknown 93.2
1913 Female, age 42, unknown 91.6
1995 Male, age 72, unknown 90.5
2664 Male, age 75, both hemispheres 88.3
Ventral tegmental area
nTPM: 101.9
2410 Female, age 72, unknown 111.2
1915 Female, age 42, unknown 106.4
2218 Male, age 76, both hemispheres 104.6
1942 Male, age 51, unknown 98.9
2223 Female, age 72, unknown 95.8
2021 Male, age 53, unknown 94.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 113.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.8
Samples: 139

Max nTPM: 225.1
Min nTPM: 53.3
Std nTPM: 35.7
Median nTPM: 105.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 225.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 220.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 206.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 193.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 186.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 185.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 180.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 176.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 176.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 175.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 174.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.4
FF:10158-103A5 76 years, female 58.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.3
Pig sample Sample description nTPM
Midbrain
nTPM: 112.3
Samples: 4

Max nTPM: 125.1
Min nTPM: 98.2
Sample A Female 125.1
Sample B Female 98.2
Sample C Male 117.8
Sample D Male 107.9
Periaqueductal gray
nTPM: 86.0
Samples: 3

Max nTPM: 106.5
Min nTPM: 74.7
Sample B Female 74.7
Sample C Male 106.5
Sample D Male 76.7
Substantia nigra
nTPM: 108.1
Samples: 4

Max nTPM: 152.6
Min nTPM: 64.0
Sample A Female 152.6
Sample B Female 85.2
Sample C Male 130.6
Sample D Male 64.0
Superior colliculi
nTPM: 111.0
Samples: 4

Max nTPM: 144.2
Min nTPM: 78.5
Sample A Female 144.2
Sample B Female 78.5
Sample C Male 119.3
Sample D Male 101.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.9
Samples: 4

Max nTPM: 199.7
Min nTPM: 159.0
Sample A Male 199.7
Sample B Male 159.0
Sample C Female 165.6
Sample D Female 191.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
71836889 Antisense, RP_051017_02_F07, Mouse strain C57BL/6J (56 days, male) 11.6
68743955 Antisense, RP_050203_01_H10, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.