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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA:5.8 nTPM
GTEx:5.3 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:5.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.2
2219 Male, age 76, both hemispheres 6.1
1827 Male, age 72, unknown 4.7
1833 Male, age 53, unknown 4.4
2019 Male, age 18, unknown 4.4
2411 Female, age 72, unknown 4.4
2828 Female, age 72, unknown 4.1
1830 Male, age 51, unknown 4.0
1870 Female, age 42, unknown 3.8
2666 Male, age 74, left hemisphere 3.7
2586 Male, age 75, left hemisphere 2.2
Dorsal raphe nucleus
nTPM: 4.2
2750 Male, age 76, both hemispheres 4.5
2047 Male, age 72, unknown 4.3
1828 Male, age 53, unknown 4.1
2016 Female, age 72, unknown 4.1
2298 Female, age 72, unknown 3.8
Inferior colliculus
nTPM: 5.0
2097 Female, age 72, unknown 6.4
1890 Male, age 53, unknown 4.9
1848 Female, age 42, unknown 4.5
2849 Male, age 72, unknown 4.3
Median raphe nucleus
nTPM: 4.2
2220 Male, age 76, midline 4.2
Pedunculopontine tegmental nucleus
nTPM: 5.0
2338 Male, age 61, both hemispheres 5.6
2334 Male, age 80, both hemispheres 4.8
1921 Female, age 85, both hemispheres 4.6
Periaquaductal grey, anterior
nTPM: 4.1
1947 Male, age 18, unknown 4.5
2502 Female, age 75, unknown 4.3
1795 Male, age 51, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 4.5
1831 Male, age 72, unknown 5.1
1840 Male, age 53, unknown 4.7
2464 Female, age 72, unknown 4.3
2850 Male, age 76, both hemispheres 4.1
Periaquaductal grey, lateral
nTPM: 3.9
2272 Male, age 74, both hemispheres 4.5
2140 Male, age 76, both hemispheres 3.7
2053 Male, age 18, unknown 3.4
Pretectal area
nTPM: 4.6
1944 Female, age 72, unknown 6.2
1816 Male, age 51, unknown 5.6
2007 Male, age 72, unknown 5.0
1815 Male, age 53, unknown 4.7
1817 Female, age 42, unknown 4.7
2667 Female, age 75, unknown 4.7
2273 Male, age 74, both hemispheres 4.5
2316 Male, age 76, right hemisphere 4.4
2224 Female, age 72, unknown 3.8
2407 Male, age 75, both hemispheres 3.6
2825 Male, age 18, unknown 3.5
Red nucleus
nTPM: 4.0
2503 Female, age 72, unknown 5.0
2823 Male, age 76, right hemisphere 4.8
1954 Female, age 42, unknown 4.5
2725 Female, age 75, unknown 4.4
1821 Female, age 72, unknown 4.3
1865 Male, age 51, unknown 3.9
1904 Male, age 53, unknown 3.9
2588 Male, age 74, left hemisphere 3.9
2785 Male, age 18, unknown 3.8
2769 Male, age 72, unknown 3.7
2227 Male, age 72, unknown 3.2
2584 Male, age 75, left hemisphere 2.9
Substantia nigra
nTPM: 5.8
1916 Female, age 42, unknown 7.3
2699 Male, age 18, unknown 7.0
1941 Male, age 53, unknown 6.8
1851 Male, age 51, unknown 6.3
2241 Male, age 72, unknown 6.2
2409 Female, age 72, unknown 5.7
2665 Male, age 74, both hemispheres 5.7
1889 Female, age 72, unknown 4.7
2583 Male, age 75, right hemisphere 4.5
2590 Female, age 75, unknown 4.0
Superior colliculus
nTPM: 4.3
2668 Female, age 75, unknown 5.2
2087 Female, age 72, unknown 5.1
1895 Male, age 76, right hemisphere 4.8
2261 Male, age 18, unknown 4.5
1796 Male, age 53, unknown 4.1
1995 Male, age 72, unknown 4.1
2587 Male, age 74, left hemisphere 4.1
2664 Male, age 75, both hemispheres 4.1
1839 Male, age 51, unknown 4.0
1913 Female, age 42, unknown 3.6
Ventral tegmental area
nTPM: 5.2
1915 Female, age 42, unknown 6.3
2218 Male, age 76, both hemispheres 5.9
2410 Female, age 72, unknown 5.4
1942 Male, age 51, unknown 5.1
2223 Female, age 72, unknown 4.4
2021 Male, age 53, unknown 4.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.3
Samples: 139

Max nTPM: 9.9
Min nTPM: 1.8
Std nTPM: 1.4
Median nTPM: 5.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 9.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 9.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 8.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 8.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 7.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 7.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 7.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 7.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 16.4
Sample C Male 20.8
Sample D Male 17.5
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 15.4
Min nTPM: 13.3
Sample B Female 14.3
Sample C Male 15.4
Sample D Male 13.3
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 19.3
Min nTPM: 12.4
Sample A Female 19.3
Sample B Female 14.8
Sample C Male 18.0
Sample D Male 12.4
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 21.1
Min nTPM: 14.4
Sample A Female 18.5
Sample B Female 14.4
Sample C Male 21.1
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.6
Sample A Male 4.6
Sample B Male 5.4
Sample C Female 5.7
Sample D Female 4.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70303028 Antisense, RP_050609_01_D10, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.