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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.3 nTPM
HPA:20.3 nTPM
GTEx:18.6 nTPM
FANTOM5:42.2 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:13.7 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.8
2019 Male, age 18, unknown 15.8
1830 Male, age 51, unknown 15.7
2828 Female, age 72, unknown 15.5
1833 Male, age 53, unknown 15.4
2411 Female, age 72, unknown 15.1
1870 Female, age 42, unknown 14.7
2666 Male, age 74, left hemisphere 14.4
1827 Male, age 72, unknown 14.3
2586 Male, age 75, left hemisphere 13.6
2219 Male, age 76, both hemispheres 13.4
Dorsal raphe nucleus
nTPM: 20.3
2298 Female, age 72, unknown 25.3
2016 Female, age 72, unknown 23.0
1828 Male, age 53, unknown 19.1
2047 Male, age 72, unknown 18.7
2750 Male, age 76, both hemispheres 15.7
Inferior colliculus
nTPM: 15.4
2097 Female, age 72, unknown 16.1
1890 Male, age 53, unknown 15.6
1848 Female, age 42, unknown 15.1
2849 Male, age 72, unknown 14.9
Median raphe nucleus
nTPM: 19.9
2220 Male, age 76, midline 19.9
Pedunculopontine tegmental nucleus
nTPM: 17.6
2338 Male, age 61, both hemispheres 22.3
2334 Male, age 80, both hemispheres 16.2
1921 Female, age 85, both hemispheres 14.4
Periaquaductal grey, anterior
nTPM: 17.9
1795 Male, age 51, unknown 20.9
2502 Female, age 75, unknown 16.8
1947 Male, age 18, unknown 16.1
Periaquaductal grey, dorsal
nTPM: 18.8
2850 Male, age 76, both hemispheres 20.9
1831 Male, age 72, unknown 20.7
1840 Male, age 53, unknown 17.3
2464 Female, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 20.0
2272 Male, age 74, both hemispheres 23.9
2140 Male, age 76, both hemispheres 18.4
2053 Male, age 18, unknown 17.7
Pretectal area
nTPM: 16.4
2224 Female, age 72, unknown 22.6
2273 Male, age 74, both hemispheres 21.3
2825 Male, age 18, unknown 16.6
2407 Male, age 75, both hemispheres 15.8
2316 Male, age 76, right hemisphere 15.6
2667 Female, age 75, unknown 15.3
1815 Male, age 53, unknown 14.9
1944 Female, age 72, unknown 14.9
1817 Female, age 42, unknown 14.8
1816 Male, age 51, unknown 14.4
2007 Male, age 72, unknown 14.0
Red nucleus
nTPM: 15.7
1821 Female, age 72, unknown 17.3
2725 Female, age 75, unknown 16.6
2823 Male, age 76, right hemisphere 16.1
2503 Female, age 72, unknown 16.0
1904 Male, age 53, unknown 15.8
2785 Male, age 18, unknown 15.8
1865 Male, age 51, unknown 15.6
2588 Male, age 74, left hemisphere 15.5
1954 Female, age 42, unknown 15.0
2769 Male, age 72, unknown 14.9
2227 Male, age 72, unknown 14.7
2584 Male, age 75, left hemisphere 14.7
Substantia nigra
nTPM: 16.5
2590 Female, age 75, unknown 19.6
2409 Female, age 72, unknown 17.2
2665 Male, age 74, both hemispheres 17.2
2699 Male, age 18, unknown 17.1
1941 Male, age 53, unknown 16.3
1851 Male, age 51, unknown 16.2
2241 Male, age 72, unknown 15.9
2583 Male, age 75, right hemisphere 15.4
1889 Female, age 72, unknown 14.9
1916 Female, age 42, unknown 14.9
Superior colliculus
nTPM: 16.9
1995 Male, age 72, unknown 28.2
2587 Male, age 74, left hemisphere 18.1
1913 Female, age 42, unknown 17.8
2087 Female, age 72, unknown 16.3
2261 Male, age 18, unknown 15.4
1796 Male, age 53, unknown 15.2
1839 Male, age 51, unknown 15.0
2664 Male, age 75, both hemispheres 14.5
2668 Female, age 75, unknown 14.4
1895 Male, age 76, right hemisphere 14.2
Ventral tegmental area
nTPM: 17.6
2021 Male, age 53, unknown 20.0
2223 Female, age 72, unknown 18.1
1942 Male, age 51, unknown 17.5
2218 Male, age 76, both hemispheres 17.1
1915 Female, age 42, unknown 16.9
2410 Female, age 72, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.6
Samples: 139

Max nTPM: 116.4
Min nTPM: 0.1
Std nTPM: 21.0
Median nTPM: 11.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 116.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 115.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 114.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 69.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 66.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 61.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 59.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 52.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 52.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 47.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.2
FF:10158-103A5 76 years, female 42.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.9
Pig sample Sample description nTPM
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 74.2
Min nTPM: 16.0
Sample A Female 74.2
Sample B Female 40.8
Sample C Male 16.0
Sample D Male 16.7
Periaqueductal gray
nTPM: 32.6
Samples: 3

Max nTPM: 33.6
Min nTPM: 30.7
Sample B Female 33.5
Sample C Male 30.7
Sample D Male 33.6
Substantia nigra
nTPM: 33.9
Samples: 4

Max nTPM: 47.2
Min nTPM: 25.3
Sample A Female 33.1
Sample B Female 29.8
Sample C Male 25.3
Sample D Male 47.2
Superior colliculi
nTPM: 25.9
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 31.7
Sample C Male 22.5
Sample D Male 27.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.6
Sample A Male 13.3
Sample B Male 13.3
Sample C Female 16.6
Sample D Female 11.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70920009 Antisense, RP_050713_02_E06, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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