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LMO3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.5 nTPM
HPA:89.5 nTPM
GTEx:128.4 nTPM
FANTOM5:394.3 Scaled Tags Per Million
Pig:114.8 nTPM
Mouse:225.7 nTPM
Allen mouse:5.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 89.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 75.3
1854 Male, age 80, left hemisphere 90.4
1857 Female, age 85, left hemisphere 89.6
2290 Female, age 72, unknown 81.3
2846 Female, age 79, unknown 72.5
2481 Female, age 94, left hemisphere 71.0
1781 Male, age 74, unknown 69.8
2288 Male, age 75, left hemisphere 66.7
2289 Male, age 61, right hemisphere 61.3
Claustrum
nTPM: 72.3
2568 Male, age 61, both hemispheres 83.3
1956 Male, age 74, unknown 79.2
2198 Male, age 80, both hemispheres 78.8
2491 Male, age 75, both hemispheres 75.3
2392 Female, age 94, both hemispheres 75.0
2284 Female, age 91, both hemispheres 70.4
2196 Female, age 79, unknown 68.9
2645 Female, age 72, unknown 66.3
2292 Female, age 85, both hemispheres 53.2
Globus pallidus, externus
nTPM: 40.5
2646 Male, age 61, right hemisphere 47.0
2395 Male, age 75, both hemispheres 44.1
2772 Female, age 79, unknown 38.7
1996 Male, age 80, right hemisphere 37.3
2567 Female, age 72, unknown 35.3
Globus pallidus, internus
nTPM: 40.9
2483 Female, age 94, right hemisphere 65.2
2287 Male, age 75, right hemisphere 44.0
1818 Male, age 74, unknown 39.5
2037 Male, age 80, right hemisphere 37.6
2778 Female, age 91, both hemispheres 37.3
2566 Female, age 72, unknown 32.7
2111 Female, age 85, right hemisphere 30.2
Nucleus accumbens
nTPM: 80.6
1856 Female, age 91, right hemisphere 120.2
2824 Male, age 61, right hemisphere 95.6
1783 Male, age 74, unknown 95.2
1806 Female, age 85, left hemisphere 80.4
2286 Male, age 75, left hemisphere 74.6
2698 Female, age 72, unknown 74.1
2391 Female, age 94, left hemisphere 54.0
2732 Male, age 80, right hemisphere 50.7
Nucleus basalis of Meynert
nTPM: 55.3
2393 Male, age 80, right hemisphere 69.4
2484 Female, age 94, left hemisphere 56.1
2569 Male, age 61, both hemispheres 53.5
2821 Male, age 75, both hemispheres 42.1
Nucleus of the diagonal band
nTPM: 89.5
2029 Male, age 61, right hemisphere 108.1
2775 Male, age 80, right hemisphere 107.3
1812 Female, age 91, both hemispheres 94.9
2195 Female, age 85, both hemispheres 85.4
1979 Male, age 74, unknown 51.6
Olfactory tubercle
nTPM: 88.9
1998 Female, age 91, both hemispheres 99.3
1846 Male, age 80, right hemisphere 95.4
2487 Female, age 94, left hemisphere 82.7
2856 Male, age 75, right hemisphere 78.5
Putamen
nTPM: 74.0
1838 Male, age 80, right hemisphere 105.7
1937 Female, age 91, right hemisphere 97.4
1829 Male, age 74, unknown 72.8
2466 Female, age 79, unknown 70.9
2482 Female, age 94, left hemisphere 62.5
2647 Male, age 75, left hemisphere 54.9
2489 Female, age 72, unknown 53.4
Septal nuclei
nTPM: 70.2
1960 Male, age 74, unknown 100.5
2031 Female, age 72, unknown 93.1
2009 Female, age 91, both hemispheres 76.9
2629 Female, age 94, right hemisphere 70.8
2059 Female, age 85, both hemispheres 65.9
2199 Male, age 80, right hemisphere 42.4
2394 Male, age 61, left hemisphere 41.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 128.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 110.6
Samples: 246

Max nTPM: 288.8
Min nTPM: 45.2
Std nTPM: 39.1
Median nTPM: 106.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 288.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 253.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 237.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 223.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 212.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 198.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 198.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 197.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 194.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 191.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 191.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 128.4
Samples: 246

Max nTPM: 274.4
Min nTPM: 21.2
Std nTPM: 44.8
Median nTPM: 130.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 274.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 235.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 222.3
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 221.5
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 212.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 206.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 204.8
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 204.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 202.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 200.8
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 198.2
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Brain - Putamen (basal ganglia)
Average nTPM: 98.0
Samples: 205

Max nTPM: 230.0
Min nTPM: 16.4
Std nTPM: 35.2
Median nTPM: 93.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 230.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 213.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 199.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 186.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 183.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 181.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 174.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 172.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 171.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 165.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 165.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 394.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 344.0
FF:10164-103B2 76 years, female 344.0
Globus pallidus
Scaled Tags Per Million: 72.4
FF:10175-103C4 60 years, female 92.3
FF:10161-103A8 76 years, female 52.5
Nucleus accumbens
Scaled Tags Per Million: 356.3
FF:10037-101F1 23-56 years, mixed 356.3
Putamen
Scaled Tags Per Million: 394.3
FF:10176-103C5 60 years, female 394.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 114.8
Pig sample Sample description nTPM
Caudate
nTPM: 84.2
Samples: 4

Max nTPM: 105.0
Min nTPM: 69.5
Sample A Female 69.8
Sample B Female 69.5
Sample C Male 105.0
Sample D Male 92.3
Putamen
nTPM: 114.8
Samples: 4

Max nTPM: 210.2
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 102.1
Sample C Male 210.2
Sample D Male 105.3
Septum
nTPM: 48.2
Samples: 4

Max nTPM: 67.1
Min nTPM: 23.5
Sample A Female 67.1
Sample B Female 61.2
Sample C Male 23.5
Sample D Male 40.8
Ventral pallidum
nTPM: 58.4
Samples: 4

Max nTPM: 79.7
Min nTPM: 32.0
Sample A Female 79.7
Sample B Female 67.4
Sample C Male 32.0
Sample D Male 54.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 225.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 179.0
Samples: 4

Max nTPM: 202.3
Min nTPM: 164.2
Sample A Male 164.2
Sample B Male 164.2
Sample C Female 202.3
Sample D Female 185.1
Septum
nTPM: 61.1
Samples: 4

Max nTPM: 78.9
Min nTPM: 50.2
Sample A Male 78.9
Sample B Male 55.2
Sample C Female 60.0
Sample D Female 50.2
Ventral forebrain
nTPM: 225.7
Samples: 4

Max nTPM: 251.4
Min nTPM: 180.2
Sample A Male 251.4
Sample B Male 180.2
Sample C Female 229.2
Sample D Female 242.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.4
71281865 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 5.4
73616037 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 2.5
71281865 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 2.5
73616037 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 1.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.