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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA005561
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Medium
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA075056
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 1710.8
Min nTPM: 105.5
Std nTPM: 355.8
Median nTPM:
352_1
62 years, male
1710.8
319_1
81 years, male
1588.3
425_1
59 years, female
1452.9
163_1
78 years, male
1433.4
377_1
82 years, female
1405.9
218_1
71 years, female
1393.2
394_1
75 years, female
1387.8
321_1
62 years, female
1371.3
355_1
70 years, female
1297.0
246_1
77 years, male
1256.4
243_1
75 years, male
1230.1
172_1
72 years, female
1228.9
389_1
86 years, female
1220.2
406_1
79 years, male
1215.1
386_1
76 years, male
1179.8
384_1
83 years, male
1178.6
350_1
84 years, female
1159.5
6_1
73 years, female
1119.6
503_1
68 years, male
1113.3
115_1
83 years, male
1105.2
375_1
74 years, female
1103.7
354_1
81 years, female
1103.2
189_1
76 years, male
1101.3
318_1
68 years, male
1093.1
347_1
72 years, male
1091.5
177_1
74 years, male
1089.6
356_1
87 years, female
1081.0
376_1
75 years, female
1077.4
251_1
78 years, male
1057.6
349_1
83 years, male
1043.3
447_1
81 years, male
1032.9
404_1
82 years, female
1029.2
405_1
91 years, male
1011.7
517_1
88 years, male
1007.7
526_1
61 years, male
1004.1
480_1
63 years, male
990.7
468_1
89 years, male
987.6
229_1
69 years, female
985.7
291_1
76 years, male
985.1
237_1
82 years, male
977.2
292_1
71 years, male
971.9
320_1
89 years, female
945.8
316_1
62 years, male
945.2
153_1
70 years, female
934.1
379_1
60 years, male
885.0
335_1
73 years, female
873.5
322_1
76 years, male
862.7
351_1
91 years, male
855.3
286_1
68 years, female
832.5
265_1
87 years, male
831.9
254_1
77 years, female
827.4
293_1
68 years, female
820.6
126_1
63 years, male
795.5
9_1
66 years, female
790.1
217_1
76 years, male
778.0
99_1
64 years, male
768.3
35_1
74 years, female
767.5
353_1
82 years, female
755.9
348_1
84 years, male
748.7
18_1
88 years, male
748.6
173_1
67 years, male
735.3
4_1
88 years, female
721.6
295_1
61 years, female
715.3
518_1
75 years, female
706.8
264_1
73 years, female
696.9
2_1
77 years, female
693.8
396_1
62 years, male
687.8
317_1
60 years, male
640.1
452_1
88 years, female
640.0
506_1
65 years, male
639.4
145_1
84 years, male
638.8
266_1
85 years, male
619.6
17_1
71 years, male
606.2
42_1
85 years, male
587.2
137_1
83 years, male
564.0
324_1
76 years, male
539.4
109_1
81 years, female
532.2
311_1
78 years, male
514.3
120_1
70 years, female
510.4
142_1
61 years, female
491.3
117_1
61 years, male
489.2
307_1
66 years, female
462.7
139_1
64 years, female
457.5
81_1
67 years, male
455.9
162_1
79 years, female
454.0
499_1
55 years, female
423.8
314_1
67 years, male
420.4
315_1
62 years, female
400.1
288_1
66 years, female
395.1
41_1
94 years, female
378.7
32_1
67 years, male
360.3
313_1
79 years, female
359.8
415_1
77 years, female
352.5
414_1
84 years, female
347.9
43_1
64 years, female
343.4
466_1
57 years, female
329.2
119_1
70 years, female
324.7
89_1
63 years, male
284.6
501_1
88 years, male
246.6
413_1
59 years, female
244.4
149_1
88 years, male
220.1
495_1
57 years, female
209.0
308_1
70 years, female
190.0
490_1
67 years, female
128.3
491_1
89 years, female
105.5
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.