ABOUTMENU
HELP
NEWS
R3HDM1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA:7.7 nTPM
GTEx:18.7 nTPM
FANTOM5:144.7 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:55.1 nTPM
Allen mouse:4.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.8
2568 Male, age 61, both hemispheres 8.0
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 6.6
2029 Male, age 61, right hemisphere 29.2
2195 Female, age 85, both hemispheres 4.1
1812 Female, age 91, both hemispheres 0.0
1979 Male, age 74, unknown 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 7.7
2856 Male, age 75, right hemisphere 21.6
2487 Female, age 94, left hemisphere 9.1
1846 Male, age 80, right hemisphere 0.0
1998 Female, age 91, both hemispheres 0.0
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 5.7
2629 Female, age 94, right hemisphere 30.3
1960 Male, age 74, unknown 7.2
2031 Female, age 72, unknown 2.3
2009 Female, age 91, both hemispheres 0.0
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.9
Samples: 246

Max nTPM: 87.4
Min nTPM: 6.4
Std nTPM: 7.8
Median nTPM: 17.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 87.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 35.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 34.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 34.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 32.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 32.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 31.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 31.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 31.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 30.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.7
Samples: 246

Max nTPM: 35.9
Min nTPM: 5.9
Std nTPM: 5.9
Median nTPM: 19.3
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 35.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 32.9
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 32.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 31.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 30.5
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 30.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 30.3
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 28.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 28.7
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 28.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 28.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 16.0
Samples: 205

Max nTPM: 43.4
Min nTPM: 6.4
Std nTPM: 5.4
Median nTPM: 15.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 43.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 30.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 29.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 28.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 28.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 26.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 26.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 26.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 25.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 25.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.8
FF:10164-103B2 76 years, female 46.8
Globus pallidus
Scaled Tags Per Million: 33.9
FF:10175-103C4 60 years, female 34.7
FF:10161-103A8 76 years, female 33.2
Nucleus accumbens
Scaled Tags Per Million: 144.7
FF:10037-101F1 23-56 years, mixed 144.7
Putamen
Scaled Tags Per Million: 54.2
FF:10176-103C5 60 years, female 54.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.3
Pig sample Sample description nTPM
Caudate
nTPM: 33.3
Samples: 4

Max nTPM: 36.8
Min nTPM: 30.8
Sample A Female 34.6
Sample B Female 31.1
Sample C Male 36.8
Sample D Male 30.8
Putamen
nTPM: 31.8
Samples: 4

Max nTPM: 35.1
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 35.1
Sample C Male 32.0
Sample D Male 34.2
Septum
nTPM: 28.5
Samples: 4

Max nTPM: 29.8
Min nTPM: 27.8
Sample A Female 28.1
Sample B Female 27.8
Sample C Male 28.2
Sample D Male 29.8
Ventral pallidum
nTPM: 32.7
Samples: 4

Max nTPM: 35.6
Min nTPM: 30.6
Sample A Female 31.7
Sample B Female 35.6
Sample C Male 32.7
Sample D Male 30.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.9
Samples: 4

Max nTPM: 48.7
Min nTPM: 34.7
Sample A Male 36.0
Sample B Male 34.7
Sample C Female 48.7
Sample D Female 48.1
Septum
nTPM: 30.7
Samples: 4

Max nTPM: 38.6
Min nTPM: 23.4
Sample A Male 38.6
Sample B Male 23.4
Sample C Female 28.2
Sample D Female 32.6
Ventral forebrain
nTPM: 55.1
Samples: 4

Max nTPM: 67.2
Min nTPM: 42.5
Sample A Male 60.7
Sample B Male 50.1
Sample C Female 42.5
Sample D Female 67.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.7
69133668 Antisense, RP_050321_02_A06, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 2.6
69133668 Antisense, RP_050321_02_A06, Mouse strain C57BL/6J (56 days, male) 2.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.