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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:38.2 nTPM
HPA:38.2 nTPM
GTEx:72.9 nTPM
FANTOM5:8.2 Scaled Tags Per Million
Mouse:2.6 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056316Antibody HPA075286
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.2
Sample id Sample description nTPM
Hippocampus
nTPM: 33.4
1911 Female, age 85, right hemisphere 37.1
2529 Female, age 94, left hemisphere 36.6
1855 Male, age 76, left hemisphere 33.0
2621 Female, age 67, right hemisphere 31.7
2148 Female, age 91, left hemisphere 31.2
1898 Male, age 80, left hemisphere 30.9
Dentate gyrus
nTPM: 32.6
2530 Female, age 94, left hemisphere 47.8
2010 Male, age 76, both hemispheres 34.4
2246 Female, age 85, both hemispheres 31.4
2528 Male, age 74, both hemispheres 29.2
2531 Female, age 67, both hemispheres 27.1
1927 Female, age 91, both hemispheres 26.0
Entorhinal gyrus
nTPM: 35.6
2117 Female, age 91, right hemisphere 45.3
2764 Male, age 80, right hemisphere 39.1
2686 Male, age 75, right hemisphere 35.4
2613 Female, age 94, left hemisphere 32.6
1938 Female, age 85, left hemisphere 30.7
1787 Male, age 76, left hemisphere 30.3
Hippocampus, CA1
nTPM: 30.5
2082 Female, age 91, right hemisphere 34.8
1873 Female, age 85, both hemispheres 32.6
2527 Male, age 74, both hemispheres 31.8
2749 Male, age 80, left hemisphere 26.8
2045 Male, age 76, both hemispheres 26.7
Hippocampus, CA2
nTPM: 33.5
1940 Female, age 85, left hemisphere 36.0
2437 Female, age 94, left hemisphere 35.8
1963 Male, age 80, left hemisphere 35.0
2249 Male, age 74, both hemispheres 34.8
2113 Female, age 91, right hemisphere 32.8
1892 Male, age 76, both hemispheres 26.7
Hippocampus, CA3
nTPM: 26.9
1891 Female, age 85, both hemispheres 36.8
1867 Male, age 76, both hemispheres 28.9
2436 Male, age 74, both hemispheres 25.4
2861 Female, age 67, both hemispheres 25.3
2137 Male, age 80, left hemisphere 23.1
2620 Female, age 94, left hemisphere 21.9
Parahippocampal cortex
nTPM: 30.6
2692 Male, age 74, both hemispheres 36.7
2018 Male, age 76, both hemispheres 35.7
2532 Female, age 72, left hemisphere 33.6
1990 Female, age 91, right hemisphere 31.5
1933 Female, age 85, both hemispheres 30.0
1850 Male, age 80, both hemispheres 29.7
2245 Female, age 91, both hemispheres 29.7
2693 Female, age 94, both hemispheres 27.2
2622 Female, age 67, right hemisphere 26.4
2250 Female, age 67, right hemisphere 25.1
Perirhinal gyrus
nTPM: 26.1
2521 Female, age 94, right hemisphere 29.8
1794 Male, age 80, right hemisphere 27.3
1847 Female, age 91, left hemisphere 25.2
2848 Male, age 76, right hemisphere 25.1
1841 Female, age 85, right hemisphere 23.2
Subiculum
nTPM: 38.2
2042 Male, age 76, both hemispheres 47.1
1901 Male, age 80, both hemispheres 41.4
2438 Female, age 94, left hemisphere 38.2
1977 Female, age 85, both hemispheres 34.9
2729 Female, age 91, right hemisphere 33.9
2619 Male, age 74, both hemispheres 33.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 72.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.9
Samples: 197

Max nTPM: 237.0
Min nTPM: 15.4
Std nTPM: 36.8
Median nTPM: 68.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 237.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 218.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 204.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 176.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 162.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 152.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 150.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 150.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 139.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 138.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 134.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 8.2
FF:10153-102I9 76 years, female 11.2
FF:10169-103B7 60 years, female 5.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.6
Samples: 4

Max nTPM: 2.6
Min nTPM: 2.6
Sample A Male 2.6
Sample B Male 2.6
Sample C Female 2.6
Sample D Female 2.6
Hippocampal formation
nTPM: 1.6
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.0
Sample A Male 1.6
Sample B Male 1.6
Sample C Female 1.0
Sample D Female 2.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
70528545 Antisense, RP_050623_02_G12, Mouse strain C57BL/6J (56 days, male) 1.1
74750022 Antisense, RP_060220_05_E12, Mouse strain C57BL/6J (56 days, male) 0.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.