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RCN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.6 nTPM
HPA:27.6 nTPM
GTEx:20.4 nTPM
FANTOM5:18.6 Scaled Tags Per Million
Mouse:13.2 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
1870 Female, age 42, unknown 24.5
2586 Male, age 75, left hemisphere 24.5
2666 Male, age 74, left hemisphere 23.7
2828 Female, age 72, unknown 22.1
1827 Male, age 72, unknown 21.2
1833 Male, age 53, unknown 21.2
1830 Male, age 51, unknown 20.3
2411 Female, age 72, unknown 20.2
2219 Male, age 76, both hemispheres 18.9
2019 Male, age 18, unknown 18.5
Dorsal raphe nucleus
nTPM: 25.6
2298 Female, age 72, unknown 28.3
2016 Female, age 72, unknown 27.8
1828 Male, age 53, unknown 25.3
2047 Male, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 21.7
Inferior colliculus
nTPM: 23.8
2097 Female, age 72, unknown 24.7
1890 Male, age 53, unknown 24.3
1848 Female, age 42, unknown 23.5
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Pedunculopontine tegmental nucleus
nTPM: 21.4
2334 Male, age 80, both hemispheres 22.5
1921 Female, age 85, both hemispheres 21.0
2338 Male, age 61, both hemispheres 20.6
Periaquaductal grey, anterior
nTPM: 24.4
1795 Male, age 51, unknown 27.4
1947 Male, age 18, unknown 23.4
2502 Female, age 75, unknown 22.4
Periaquaductal grey, dorsal
nTPM: 26.5
2850 Male, age 76, both hemispheres 29.4
1840 Male, age 53, unknown 27.3
1831 Male, age 72, unknown 26.1
2464 Female, age 72, unknown 23.1
Periaquaductal grey, lateral
nTPM: 27.6
2140 Male, age 76, both hemispheres 28.2
2053 Male, age 18, unknown 27.5
2272 Male, age 74, both hemispheres 27.2
Pretectal area
nTPM: 23.6
2825 Male, age 18, unknown 29.3
2224 Female, age 72, unknown 28.8
2273 Male, age 74, both hemispheres 27.9
2407 Male, age 75, both hemispheres 23.1
2667 Female, age 75, unknown 23.0
1944 Female, age 72, unknown 22.1
2316 Male, age 76, right hemisphere 21.9
1816 Male, age 51, unknown 21.5
1815 Male, age 53, unknown 21.4
1817 Female, age 42, unknown 20.8
2007 Male, age 72, unknown 19.4
Red nucleus
nTPM: 20.9
2725 Female, age 75, unknown 25.2
2584 Male, age 75, left hemisphere 22.9
2503 Female, age 72, unknown 22.7
2227 Male, age 72, unknown 21.4
1954 Female, age 42, unknown 21.2
2769 Male, age 72, unknown 20.9
1865 Male, age 51, unknown 20.5
1821 Female, age 72, unknown 20.3
1904 Male, age 53, unknown 20.2
2823 Male, age 76, right hemisphere 19.6
2785 Male, age 18, unknown 18.2
2588 Male, age 74, left hemisphere 17.8
Substantia nigra
nTPM: 22.7
2409 Female, age 72, unknown 25.4
2699 Male, age 18, unknown 24.7
2583 Male, age 75, right hemisphere 24.4
2241 Male, age 72, unknown 23.4
1916 Female, age 42, unknown 22.3
1851 Male, age 51, unknown 22.0
2590 Female, age 75, unknown 21.9
1889 Female, age 72, unknown 21.2
1941 Male, age 53, unknown 21.0
2665 Male, age 74, both hemispheres 20.9
Superior colliculus
nTPM: 22.4
1995 Male, age 72, unknown 27.0
1913 Female, age 42, unknown 23.7
2261 Male, age 18, unknown 23.5
1796 Male, age 53, unknown 23.2
1839 Male, age 51, unknown 22.3
2087 Female, age 72, unknown 22.0
2664 Male, age 75, both hemispheres 21.8
2587 Male, age 74, left hemisphere 21.7
2668 Female, age 75, unknown 20.7
1895 Male, age 76, right hemisphere 18.1
Ventral tegmental area
nTPM: 24.5
2021 Male, age 53, unknown 27.2
2223 Female, age 72, unknown 26.3
1942 Male, age 51, unknown 25.7
1915 Female, age 42, unknown 24.3
2218 Male, age 76, both hemispheres 22.3
2410 Female, age 72, unknown 21.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 46.5
Min nTPM: 4.4
Std nTPM: 7.8
Median nTPM: 18.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 46.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 39.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 38.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 38.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 35.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 34.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 34.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.6
FF:10158-103A5 76 years, female 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.6
Sample A Male 13.1
Sample B Male 14.4
Sample C Female 11.6
Sample D Female 13.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
79591573 Antisense, RP_071204_04_C03, Mouse strain C57BL/6J (56 days, male) 1.2
69818048 Antisense, RP_050510_04_C10, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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