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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:28.3 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:39.9 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.1
2846 Female, age 79, unknown 20.2
2481 Female, age 94, left hemisphere 19.9
2288 Male, age 75, left hemisphere 19.8
1781 Male, age 74, unknown 19.7
1857 Female, age 85, left hemisphere 19.4
1854 Male, age 80, left hemisphere 19.2
2290 Female, age 72, unknown 18.7
2289 Male, age 61, right hemisphere 15.7
Claustrum
nTPM: 17.2
2198 Male, age 80, both hemispheres 19.4
2196 Female, age 79, unknown 18.3
1956 Male, age 74, unknown 17.7
2392 Female, age 94, both hemispheres 17.4
2284 Female, age 91, both hemispheres 16.8
2491 Male, age 75, both hemispheres 16.7
2292 Female, age 85, both hemispheres 16.4
2568 Male, age 61, both hemispheres 16.4
2645 Female, age 72, unknown 15.7
Globus pallidus, externus
nTPM: 17.2
2395 Male, age 75, both hemispheres 19.4
2772 Female, age 79, unknown 19.3
1996 Male, age 80, right hemisphere 17.5
2567 Female, age 72, unknown 15.3
2646 Male, age 61, right hemisphere 14.4
Globus pallidus, internus
nTPM: 17.7
2287 Male, age 75, right hemisphere 21.4
2483 Female, age 94, right hemisphere 21.3
1818 Male, age 74, unknown 17.0
2778 Female, age 91, both hemispheres 16.5
2037 Male, age 80, right hemisphere 16.2
2566 Female, age 72, unknown 16.0
2111 Female, age 85, right hemisphere 15.6
Nucleus accumbens
nTPM: 18.8
1856 Female, age 91, right hemisphere 21.1
1783 Male, age 74, unknown 20.4
2698 Female, age 72, unknown 20.0
1806 Female, age 85, left hemisphere 19.1
2824 Male, age 61, right hemisphere 18.8
2286 Male, age 75, left hemisphere 17.9
2391 Female, age 94, left hemisphere 17.4
2732 Male, age 80, right hemisphere 15.5
Nucleus basalis of Meynert
nTPM: 17.3
2393 Male, age 80, right hemisphere 18.9
2484 Female, age 94, left hemisphere 17.9
2821 Male, age 75, both hemispheres 17.9
2569 Male, age 61, both hemispheres 14.6
Nucleus of the diagonal band
nTPM: 19.0
2775 Male, age 80, right hemisphere 22.6
1812 Female, age 91, both hemispheres 19.4
2195 Female, age 85, both hemispheres 18.7
2029 Male, age 61, right hemisphere 18.1
1979 Male, age 74, unknown 16.4
Olfactory tubercle
nTPM: 18.3
1846 Male, age 80, right hemisphere 20.2
1998 Female, age 91, both hemispheres 18.9
2487 Female, age 94, left hemisphere 18.3
2856 Male, age 75, right hemisphere 16.0
Putamen
nTPM: 19.2
1838 Male, age 80, right hemisphere 21.7
2466 Female, age 79, unknown 20.4
1937 Female, age 91, right hemisphere 19.9
1829 Male, age 74, unknown 18.7
2482 Female, age 94, left hemisphere 18.5
2647 Male, age 75, left hemisphere 18.3
2489 Female, age 72, unknown 17.2
Septal nuclei
nTPM: 17.6
1960 Male, age 74, unknown 20.2
2031 Female, age 72, unknown 19.8
2009 Female, age 91, both hemispheres 18.9
2629 Female, age 94, right hemisphere 16.9
2059 Female, age 85, both hemispheres 16.4
2394 Male, age 61, left hemisphere 15.9
2199 Male, age 80, right hemisphere 15.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.0
Samples: 246

Max nTPM: 46.3
Min nTPM: 8.4
Std nTPM: 8.1
Median nTPM: 23.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 46.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 44.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 42.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 41.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 41.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 40.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 40.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 38.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 38.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 38.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 61.0
Min nTPM: 3.4
Std nTPM: 10.0
Median nTPM: 29.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 61.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 60.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 50.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 50.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 47.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 46.5
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 45.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 45.0
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 44.6
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 44.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 44.1
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Brain - Putamen (basal ganglia)
Average nTPM: 23.3
Samples: 205

Max nTPM: 43.4
Min nTPM: 6.3
Std nTPM: 8.2
Median nTPM: 22.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 43.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 42.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 42.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 41.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 40.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 40.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 39.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 38.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 38.2
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 38.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 38.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.0
FF:10164-103B2 76 years, female 68.0
Globus pallidus
Scaled Tags Per Million: 92.7
FF:10175-103C4 60 years, female 131.0
FF:10161-103A8 76 years, female 54.3
Nucleus accumbens
Scaled Tags Per Million: 102.7
FF:10037-101F1 23-56 years, mixed 102.7
Putamen
Scaled Tags Per Million: 84.3
FF:10176-103C5 60 years, female 84.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Caudate
nTPM: 15.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 15.1
Sample C Male 17.6
Sample D Male 14.6
Putamen
nTPM: 17.0
Samples: 4

Max nTPM: 20.1
Min nTPM: 14.4
Sample A Female 16.3
Sample B Female 14.4
Sample C Male 20.1
Sample D Male 17.1
Septum
nTPM: 15.8
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.4
Sample A Female 17.1
Sample B Female 14.4
Sample C Male 16.4
Sample D Male 15.3
Ventral pallidum
nTPM: 15.8
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.1
Sample A Female 15.6
Sample B Female 14.1
Sample C Male 17.4
Sample D Male 15.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.0
Samples: 4

Max nTPM: 41.1
Min nTPM: 39.0
Sample A Male 40.1
Sample B Male 39.6
Sample C Female 39.0
Sample D Female 41.1
Septum
nTPM: 25.9
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.2
Sample A Male 26.7
Sample B Male 22.2
Sample C Female 27.4
Sample D Female 27.2
Ventral forebrain
nTPM: 39.1
Samples: 4

Max nTPM: 43.4
Min nTPM: 36.2
Sample A Male 43.4
Sample B Male 36.6
Sample C Female 36.2
Sample D Female 40.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
1636 Antisense, RP_040507_02_D04, Mouse strain C57BL/6J (56 days, male) 0.0
1635 Antisense, RP_040507_02_D04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
1636 Antisense, RP_040507_02_D04, Mouse strain C57BL/6J (56 days, male) 0.1
1635 Antisense, RP_040507_02_D04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.