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HERPUD1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.8 nTPM
HPA:72.8 nTPM
GTEx:54.2 nTPM
FANTOM5:186.3 Scaled Tags Per Million
Pig:56.0 nTPM
Mouse:61.2 nTPM
Allen mouse:11.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.3
2666 Male, age 74, left hemisphere 83.4
2019 Male, age 18, unknown 76.2
1870 Female, age 42, unknown 69.8
1830 Male, age 51, unknown 69.3
1833 Male, age 53, unknown 67.8
1827 Male, age 72, unknown 67.3
2411 Female, age 72, unknown 67.1
2219 Male, age 76, both hemispheres 66.2
2828 Female, age 72, unknown 66.0
2586 Male, age 75, left hemisphere 60.2
Dorsal raphe nucleus
nTPM: 65.9
2298 Female, age 72, unknown 69.4
1828 Male, age 53, unknown 67.6
2016 Female, age 72, unknown 65.6
2750 Male, age 76, both hemispheres 65.0
2047 Male, age 72, unknown 62.1
Inferior colliculus
nTPM: 68.8
2097 Female, age 72, unknown 71.1
1890 Male, age 53, unknown 69.9
2849 Male, age 72, unknown 67.8
1848 Female, age 42, unknown 66.2
Median raphe nucleus
nTPM: 71.4
2220 Male, age 76, midline 71.4
Pedunculopontine tegmental nucleus
nTPM: 67.9
2338 Male, age 61, both hemispheres 69.9
2334 Male, age 80, both hemispheres 69.0
1921 Female, age 85, both hemispheres 64.6
Periaquaductal grey, anterior
nTPM: 67.2
2502 Female, age 75, unknown 69.7
1947 Male, age 18, unknown 66.9
1795 Male, age 51, unknown 65.1
Periaquaductal grey, dorsal
nTPM: 68.8
2850 Male, age 76, both hemispheres 73.9
1831 Male, age 72, unknown 72.1
2464 Female, age 72, unknown 67.0
1840 Male, age 53, unknown 62.5
Periaquaductal grey, lateral
nTPM: 68.8
2140 Male, age 76, both hemispheres 69.9
2272 Male, age 74, both hemispheres 69.9
2053 Male, age 18, unknown 66.6
Pretectal area
nTPM: 70.2
1817 Female, age 42, unknown 77.0
2007 Male, age 72, unknown 76.8
1815 Male, age 53, unknown 75.4
1944 Female, age 72, unknown 74.4
1816 Male, age 51, unknown 73.8
2407 Male, age 75, both hemispheres 69.6
2224 Female, age 72, unknown 67.2
2667 Female, age 75, unknown 65.5
2273 Male, age 74, both hemispheres 64.8
2316 Male, age 76, right hemisphere 64.3
2825 Male, age 18, unknown 63.1
Red nucleus
nTPM: 71.4
2785 Male, age 18, unknown 76.0
2588 Male, age 74, left hemisphere 75.3
1904 Male, age 53, unknown 75.0
1954 Female, age 42, unknown 74.8
1821 Female, age 72, unknown 73.5
1865 Male, age 51, unknown 73.2
2503 Female, age 72, unknown 71.1
2769 Male, age 72, unknown 68.6
2227 Male, age 72, unknown 68.1
2725 Female, age 75, unknown 68.1
2584 Male, age 75, left hemisphere 66.6
2823 Male, age 76, right hemisphere 66.0
Substantia nigra
nTPM: 72.8
2665 Male, age 74, both hemispheres 86.9
2590 Female, age 75, unknown 72.9
2241 Male, age 72, unknown 72.2
1889 Female, age 72, unknown 71.9
2409 Female, age 72, unknown 71.8
1851 Male, age 51, unknown 71.4
1916 Female, age 42, unknown 71.2
2699 Male, age 18, unknown 70.0
1941 Male, age 53, unknown 69.8
2583 Male, age 75, right hemisphere 69.5
Superior colliculus
nTPM: 67.8
2587 Male, age 74, left hemisphere 73.6
2668 Female, age 75, unknown 71.8
1995 Male, age 72, unknown 70.2
1913 Female, age 42, unknown 69.7
1796 Male, age 53, unknown 68.8
2261 Male, age 18, unknown 68.8
2087 Female, age 72, unknown 67.8
1839 Male, age 51, unknown 65.9
2664 Male, age 75, both hemispheres 61.0
1895 Male, age 76, right hemisphere 60.3
Ventral tegmental area
nTPM: 68.3
2410 Female, age 72, unknown 72.8
1915 Female, age 42, unknown 68.9
2223 Female, age 72, unknown 67.9
2218 Male, age 76, both hemispheres 67.3
1942 Male, age 51, unknown 67.0
2021 Male, age 53, unknown 65.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.2
Samples: 139

Max nTPM: 113.5
Min nTPM: 19.4
Std nTPM: 18.8
Median nTPM: 48.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 113.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 112.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 112.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 108.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 104.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 103.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 102.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 99.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 99.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 97.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 92.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 186.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 186.3
FF:10158-103A5 76 years, female 186.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.0
Pig sample Sample description nTPM
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 60.2
Min nTPM: 36.2
Sample A Female 46.8
Sample B Female 36.2
Sample C Male 60.2
Sample D Male 50.5
Periaqueductal gray
nTPM: 42.1
Samples: 3

Max nTPM: 46.8
Min nTPM: 34.3
Sample B Female 34.3
Sample C Male 45.3
Sample D Male 46.8
Substantia nigra
nTPM: 40.4
Samples: 4

Max nTPM: 51.7
Min nTPM: 29.1
Sample A Female 51.7
Sample B Female 37.8
Sample C Male 42.8
Sample D Male 29.1
Superior colliculi
nTPM: 56.0
Samples: 4

Max nTPM: 58.5
Min nTPM: 53.1
Sample A Female 58.5
Sample B Female 53.1
Sample C Male 57.4
Sample D Male 55.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.2
Samples: 4

Max nTPM: 65.4
Min nTPM: 56.2
Sample A Male 58.6
Sample B Male 56.2
Sample C Female 65.4
Sample D Female 64.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
686221 Antisense, RP_040916_01_C07, Mouse strain C57BL/6J (56 days, male) 11.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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