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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		126.342
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:53.9 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:31.4 nTPM
Allen mouse:7.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040999Antibody CAB032656
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079015
Hippocampal formation mean intensity 126.342
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 92.459
Molecular layer of the dentate gyrus 73.608
Granular dentate gyrus 77.132
CA1 - oriens layer 88.780
CA1 - pyramidal layer 68.298
CA1 - radiatum layer 88.578
CA2 - oriens layer 101.305
CA2 - pyramidal layer 73.396
CA2 - radiatum layer 104.908
CA3 - oriens layer 114.479
CA3 - pyramidal layer 60.506
CA3 - radiatum layer 115.277
Stratum lucidum 84.110
Lacunosum moleculare 45.021
Subiculum 60.406

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Hippocampus
nTPM: 38.7
2621 Female, age 67, right hemisphere 42.1
2148 Female, age 91, left hemisphere 40.9
1898 Male, age 80, left hemisphere 40.3
1855 Male, age 76, left hemisphere 37.1
1911 Female, age 85, right hemisphere 36.7
2529 Female, age 94, left hemisphere 35.1
Dentate gyrus
nTPM: 38.6
2530 Female, age 94, left hemisphere 46.2
2010 Male, age 76, both hemispheres 42.8
1927 Female, age 91, both hemispheres 37.4
2246 Female, age 85, both hemispheres 36.2
2528 Male, age 74, both hemispheres 36.2
2531 Female, age 67, both hemispheres 32.5
Entorhinal gyrus
nTPM: 27.5
2117 Female, age 91, right hemisphere 34.9
1787 Male, age 76, left hemisphere 27.0
2764 Male, age 80, right hemisphere 26.5
2686 Male, age 75, right hemisphere 25.7
1938 Female, age 85, left hemisphere 25.3
2613 Female, age 94, left hemisphere 25.2
Hippocampus, CA1
nTPM: 40.4
2749 Male, age 80, left hemisphere 53.6
1873 Female, age 85, both hemispheres 52.3
2527 Male, age 74, both hemispheres 35.8
2045 Male, age 76, both hemispheres 30.3
2082 Female, age 91, right hemisphere 30.2
Hippocampus, CA2
nTPM: 38.0
1963 Male, age 80, left hemisphere 58.8
2437 Female, age 94, left hemisphere 36.2
1892 Male, age 76, both hemispheres 35.8
2249 Male, age 74, both hemispheres 33.6
1940 Female, age 85, left hemisphere 33.0
2113 Female, age 91, right hemisphere 30.7
Hippocampus, CA3
nTPM: 35.6
2861 Female, age 67, both hemispheres 41.4
2137 Male, age 80, left hemisphere 38.6
2436 Male, age 74, both hemispheres 34.2
1891 Female, age 85, both hemispheres 33.6
1867 Male, age 76, both hemispheres 33.4
2620 Female, age 94, left hemisphere 32.3
Parahippocampal cortex
nTPM: 26.6
2018 Male, age 76, both hemispheres 31.5
2692 Male, age 74, both hemispheres 30.4
2245 Female, age 91, both hemispheres 29.5
2532 Female, age 72, left hemisphere 25.8
1990 Female, age 91, right hemisphere 25.6
2622 Female, age 67, right hemisphere 25.5
1933 Female, age 85, both hemispheres 24.9
2250 Female, age 67, right hemisphere 24.6
2693 Female, age 94, both hemispheres 24.4
1850 Male, age 80, both hemispheres 23.7
Perirhinal gyrus
nTPM: 23.7
2521 Female, age 94, right hemisphere 25.9
1847 Female, age 91, left hemisphere 23.8
1794 Male, age 80, right hemisphere 23.5
2848 Male, age 76, right hemisphere 23.2
1841 Female, age 85, right hemisphere 22.2
Subiculum
nTPM: 33.6
2042 Male, age 76, both hemispheres 40.5
2729 Female, age 91, right hemisphere 38.0
1901 Male, age 80, both hemispheres 36.0
2619 Male, age 74, both hemispheres 30.4
2438 Female, age 94, left hemisphere 30.1
1977 Female, age 85, both hemispheres 26.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.9
Samples: 197

Max nTPM: 123.0
Min nTPM: 18.4
Std nTPM: 19.9
Median nTPM: 51.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 123.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 120.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 110.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 109.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 109.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 106.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 105.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 98.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 96.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 96.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 93.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.0
FF:10153-102I9 76 years, female 32.8
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 24.9
Sample A Female 36.6
Sample B Female 28.0
Sample C Male 26.3
Sample D Male 24.9
Entorhinal cortex
nTPM: 10.9
Samples: 4

Max nTPM: 12.1
Min nTPM: 8.4
Sample A Female 11.0
Sample B Female 12.0
Sample C Male 12.1
Sample D Male 8.4
Subiculum
nTPM: 16.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 12.8
Sample A Female 21.6
Sample B Female 16.9
Sample C Male 14.1
Sample D Male 12.8
Ventral hippocampus
nTPM: 20.2
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.1
Sample A Female 19.8
Sample B Female 16.1
Sample C Male 22.5
Sample D Male 22.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 3.5
Sample A Male 5.4
Sample B Male 3.5
Sample C Female 11.5
Sample D Female 5.0
Hippocampal formation
nTPM: 31.4
Samples: 4

Max nTPM: 39.7
Min nTPM: 22.4
Sample A Male 22.4
Sample B Male 32.4
Sample C Female 39.7
Sample D Female 31.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.1
356087 Antisense, RP_040617_02_C03, Mouse strain C57BL/6J (56 days, male) 8.7
71608386 Antisense, RP_050927_01_F03, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.