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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.0 nTPM
HPA:49.0 nTPM
GTEx:48.7 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:72.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.5
2586 Male, age 75, left hemisphere 50.3
2219 Male, age 76, both hemispheres 48.5
2828 Female, age 72, unknown 48.2
2411 Female, age 72, unknown 48.1
1827 Male, age 72, unknown 47.7
1870 Female, age 42, unknown 47.6
1830 Male, age 51, unknown 46.9
1833 Male, age 53, unknown 46.4
2666 Male, age 74, left hemisphere 46.2
2019 Male, age 18, unknown 44.9
Dorsal raphe nucleus
nTPM: 46.4
1828 Male, age 53, unknown 47.6
2750 Male, age 76, both hemispheres 46.9
2016 Female, age 72, unknown 46.5
2047 Male, age 72, unknown 46.1
2298 Female, age 72, unknown 44.7
Inferior colliculus
nTPM: 47.2
2849 Male, age 72, unknown 47.8
1890 Male, age 53, unknown 47.4
1848 Female, age 42, unknown 47.0
2097 Female, age 72, unknown 46.6
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Pedunculopontine tegmental nucleus
nTPM: 47.4
2338 Male, age 61, both hemispheres 49.3
2334 Male, age 80, both hemispheres 47.7
1921 Female, age 85, both hemispheres 45.2
Periaquaductal grey, anterior
nTPM: 47.8
2502 Female, age 75, unknown 48.3
1947 Male, age 18, unknown 48.2
1795 Male, age 51, unknown 47.0
Periaquaductal grey, dorsal
nTPM: 45.7
1840 Male, age 53, unknown 46.5
2464 Female, age 72, unknown 45.9
1831 Male, age 72, unknown 45.5
2850 Male, age 76, both hemispheres 45.1
Periaquaductal grey, lateral
nTPM: 46.7
2272 Male, age 74, both hemispheres 47.2
2053 Male, age 18, unknown 46.8
2140 Male, age 76, both hemispheres 46.0
Pretectal area
nTPM: 46.5
2407 Male, age 75, both hemispheres 48.4
2667 Female, age 75, unknown 48.0
2273 Male, age 74, both hemispheres 47.2
2825 Male, age 18, unknown 47.1
2007 Male, age 72, unknown 46.9
1944 Female, age 72, unknown 46.7
1816 Male, age 51, unknown 46.3
1817 Female, age 42, unknown 46.0
2224 Female, age 72, unknown 46.0
2316 Male, age 76, right hemisphere 45.1
1815 Male, age 53, unknown 44.3
Red nucleus
nTPM: 48.3
2584 Male, age 75, left hemisphere 49.9
2227 Male, age 72, unknown 49.5
1865 Male, age 51, unknown 49.4
2588 Male, age 74, left hemisphere 49.1
2503 Female, age 72, unknown 48.9
2769 Male, age 72, unknown 48.3
1821 Female, age 72, unknown 48.1
1904 Male, age 53, unknown 47.7
2785 Male, age 18, unknown 47.5
2823 Male, age 76, right hemisphere 47.1
2725 Female, age 75, unknown 47.0
1954 Female, age 42, unknown 46.9
Substantia nigra
nTPM: 49.0
1916 Female, age 42, unknown 51.8
1851 Male, age 51, unknown 51.6
2699 Male, age 18, unknown 50.6
1941 Male, age 53, unknown 49.2
2583 Male, age 75, right hemisphere 49.0
2665 Male, age 74, both hemispheres 48.5
2241 Male, age 72, unknown 47.9
2409 Female, age 72, unknown 47.4
2590 Female, age 75, unknown 47.2
1889 Female, age 72, unknown 46.4
Superior colliculus
nTPM: 47.2
1796 Male, age 53, unknown 48.2
2668 Female, age 75, unknown 48.0
2261 Male, age 18, unknown 47.9
1913 Female, age 42, unknown 47.7
2664 Male, age 75, both hemispheres 47.4
2587 Male, age 74, left hemisphere 47.2
1895 Male, age 76, right hemisphere 46.7
1839 Male, age 51, unknown 46.3
2087 Female, age 72, unknown 46.3
1995 Male, age 72, unknown 46.1
Ventral tegmental area
nTPM: 48.1
1915 Female, age 42, unknown 50.8
2223 Female, age 72, unknown 48.7
2021 Male, age 53, unknown 48.4
2218 Male, age 76, both hemispheres 47.8
1942 Male, age 51, unknown 47.2
2410 Female, age 72, unknown 45.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.7
Samples: 139

Max nTPM: 113.0
Min nTPM: 22.3
Std nTPM: 12.9
Median nTPM: 46.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 113.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 106.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 89.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 78.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 74.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 71.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 68.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 66.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 64.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 63.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 63.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 34.2
Min nTPM: 14.5
Sample A Female 34.2
Sample B Female 23.1
Sample C Male 14.5
Sample D Male 14.9
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 19.0
Min nTPM: 14.6
Sample B Female 18.6
Sample C Male 19.0
Sample D Male 14.6
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 27.9
Min nTPM: 16.7
Sample A Female 27.9
Sample B Female 16.7
Sample C Male 19.6
Sample D Male 17.5
Superior colliculi
nTPM: 19.1
Samples: 4

Max nTPM: 22.1
Min nTPM: 15.8
Sample A Female 22.1
Sample B Female 19.6
Sample C Male 18.7
Sample D Male 15.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.7
Samples: 4

Max nTPM: 80.6
Min nTPM: 63.6
Sample A Male 80.6
Sample B Male 68.0
Sample C Female 63.6
Sample D Female 78.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68546242 Antisense, RP_050120_02_C02, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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