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TRAPPC3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:43.1 nTPM
HPA:43.1 nTPM
GTEx:35.9 nTPM
FANTOM5:54.2 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:86.7 nTPM
Allen mouse:2.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028408
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 43.1
Sample id Sample description nTPM
Hippocampus
nTPM: 41.2
1898 Male, age 80, left hemisphere 43.9
1855 Male, age 76, left hemisphere 42.4
2148 Female, age 91, left hemisphere 41.7
2621 Female, age 67, right hemisphere 39.9
1911 Female, age 85, right hemisphere 39.6
2529 Female, age 94, left hemisphere 39.4
Dentate gyrus
nTPM: 41.4
2528 Male, age 74, both hemispheres 42.9
1927 Female, age 91, both hemispheres 42.2
2010 Male, age 76, both hemispheres 41.9
2531 Female, age 67, both hemispheres 40.7
2246 Female, age 85, both hemispheres 40.5
2530 Female, age 94, left hemisphere 40.3
Entorhinal gyrus
nTPM: 41.0
2764 Male, age 80, right hemisphere 43.6
1787 Male, age 76, left hemisphere 41.4
1938 Female, age 85, left hemisphere 41.4
2117 Female, age 91, right hemisphere 41.1
2686 Male, age 75, right hemisphere 39.9
2613 Female, age 94, left hemisphere 38.4
Hippocampus, CA1
nTPM: 42.6
2749 Male, age 80, left hemisphere 46.3
2045 Male, age 76, both hemispheres 42.2
2527 Male, age 74, both hemispheres 41.9
2082 Female, age 91, right hemisphere 41.6
1873 Female, age 85, both hemispheres 41.1
Hippocampus, CA2
nTPM: 41.9
1963 Male, age 80, left hemisphere 44.0
1892 Male, age 76, both hemispheres 43.0
2249 Male, age 74, both hemispheres 42.5
1940 Female, age 85, left hemisphere 42.0
2113 Female, age 91, right hemisphere 40.9
2437 Female, age 94, left hemisphere 39.3
Hippocampus, CA3
nTPM: 42.2
2620 Female, age 94, left hemisphere 43.4
2436 Male, age 74, both hemispheres 43.3
2137 Male, age 80, left hemisphere 42.5
1891 Female, age 85, both hemispheres 42.3
1867 Male, age 76, both hemispheres 42.2
2861 Female, age 67, both hemispheres 39.2
Parahippocampal cortex
nTPM: 40.9
1850 Male, age 80, both hemispheres 43.6
1990 Female, age 91, right hemisphere 41.6
2018 Male, age 76, both hemispheres 41.4
2250 Female, age 67, right hemisphere 41.2
1933 Female, age 85, both hemispheres 41.0
2693 Female, age 94, both hemispheres 40.9
2245 Female, age 91, both hemispheres 40.1
2532 Female, age 72, left hemisphere 39.9
2692 Male, age 74, both hemispheres 39.9
2622 Female, age 67, right hemisphere 39.5
Perirhinal gyrus
nTPM: 43.1
1794 Male, age 80, right hemisphere 45.6
1847 Female, age 91, left hemisphere 44.6
1841 Female, age 85, right hemisphere 43.1
2521 Female, age 94, right hemisphere 41.8
2848 Male, age 76, right hemisphere 40.5
Subiculum
nTPM: 41.1
1977 Female, age 85, both hemispheres 42.9
1901 Male, age 80, both hemispheres 42.3
2729 Female, age 91, right hemisphere 41.3
2619 Male, age 74, both hemispheres 40.5
2438 Female, age 94, left hemisphere 40.0
2042 Male, age 76, both hemispheres 39.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.9
Samples: 197

Max nTPM: 59.1
Min nTPM: 23.0
Std nTPM: 6.1
Median nTPM: 34.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 59.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 51.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 50.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 49.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 49.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 49.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 49.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 47.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 47.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 46.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 46.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 54.2
FF:10169-103B7 60 years, female 58.5
FF:10153-102I9 76 years, female 49.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 44.6
Samples: 4

Max nTPM: 58.4
Min nTPM: 38.0
Sample A Female 58.4
Sample B Female 43.3
Sample C Male 38.6
Sample D Male 38.0
Entorhinal cortex
nTPM: 38.1
Samples: 4

Max nTPM: 46.3
Min nTPM: 30.9
Sample A Female 41.7
Sample B Female 46.3
Sample C Male 33.5
Sample D Male 30.9
Subiculum
nTPM: 36.9
Samples: 4

Max nTPM: 51.2
Min nTPM: 28.4
Sample A Female 51.2
Sample B Female 34.9
Sample C Male 28.4
Sample D Male 33.0
Ventral hippocampus
nTPM: 38.8
Samples: 4

Max nTPM: 41.4
Min nTPM: 33.1
Sample A Female 41.4
Sample B Female 33.1
Sample C Male 39.9
Sample D Male 40.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.8
Samples: 4

Max nTPM: 86.0
Min nTPM: 77.0
Sample A Male 82.7
Sample B Male 86.0
Sample C Female 85.6
Sample D Female 77.0
Hippocampal formation
nTPM: 86.7
Samples: 4

Max nTPM: 95.0
Min nTPM: 80.6
Sample A Male 95.0
Sample B Male 84.6
Sample C Female 80.6
Sample D Female 86.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.6
513234 Antisense, RP_040810_01_D01, Mouse strain C57BL/6J (56 days, male) 4.6
75931524 Antisense, RP_060606_01_B03, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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