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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:7.6 nTPM
HPA:7.6 nTPM
GTEx:12.7 nTPM
FANTOM5:55.7 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:6.7 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044477
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.6
Sample id Sample description nTPM
Hippocampus
nTPM: 7.1
1898 Male, age 80, left hemisphere 9.3
1911 Female, age 85, right hemisphere 7.9
2529 Female, age 94, left hemisphere 6.9
2148 Female, age 91, left hemisphere 6.5
1855 Male, age 76, left hemisphere 6.4
2621 Female, age 67, right hemisphere 5.6
Dentate gyrus
nTPM: 6.7
2010 Male, age 76, both hemispheres 7.0
2528 Male, age 74, both hemispheres 7.0
1927 Female, age 91, both hemispheres 6.9
2246 Female, age 85, both hemispheres 6.5
2530 Female, age 94, left hemisphere 6.5
2531 Female, age 67, both hemispheres 6.4
Entorhinal gyrus
nTPM: 6.7
1938 Female, age 85, left hemisphere 7.1
2686 Male, age 75, right hemisphere 7.1
2764 Male, age 80, right hemisphere 6.7
1787 Male, age 76, left hemisphere 6.5
2117 Female, age 91, right hemisphere 6.5
2613 Female, age 94, left hemisphere 6.2
Hippocampus, CA1
nTPM: 7.6
2045 Male, age 76, both hemispheres 9.2
2082 Female, age 91, right hemisphere 7.7
1873 Female, age 85, both hemispheres 7.5
2749 Male, age 80, left hemisphere 7.4
2527 Male, age 74, both hemispheres 6.1
Hippocampus, CA2
nTPM: 7.0
2113 Female, age 91, right hemisphere 8.7
2249 Male, age 74, both hemispheres 7.1
1940 Female, age 85, left hemisphere 6.9
1892 Male, age 76, both hemispheres 6.6
2437 Female, age 94, left hemisphere 6.6
1963 Male, age 80, left hemisphere 6.0
Hippocampus, CA3
nTPM: 7.0
2137 Male, age 80, left hemisphere 9.8
1891 Female, age 85, both hemispheres 7.8
2620 Female, age 94, left hemisphere 7.1
2436 Male, age 74, both hemispheres 6.2
2861 Female, age 67, both hemispheres 5.8
1867 Male, age 76, both hemispheres 5.4
Parahippocampal cortex
nTPM: 6.6
2018 Male, age 76, both hemispheres 7.6
1850 Male, age 80, both hemispheres 7.2
1990 Female, age 91, right hemisphere 7.0
2692 Male, age 74, both hemispheres 7.0
2250 Female, age 67, right hemisphere 6.9
1933 Female, age 85, both hemispheres 6.4
2245 Female, age 91, both hemispheres 6.2
2532 Female, age 72, left hemisphere 6.0
2693 Female, age 94, both hemispheres 6.0
2622 Female, age 67, right hemisphere 5.9
Perirhinal gyrus
nTPM: 6.0
1841 Female, age 85, right hemisphere 6.5
1794 Male, age 80, right hemisphere 5.9
2848 Male, age 76, right hemisphere 5.9
2521 Female, age 94, right hemisphere 5.8
1847 Female, age 91, left hemisphere 5.7
Subiculum
nTPM: 6.7
2729 Female, age 91, right hemisphere 8.1
1901 Male, age 80, both hemispheres 7.0
1977 Female, age 85, both hemispheres 6.8
2042 Male, age 76, both hemispheres 6.7
2619 Male, age 74, both hemispheres 6.3
2438 Female, age 94, left hemisphere 5.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.7
Samples: 197

Max nTPM: 21.4
Min nTPM: 6.3
Std nTPM: 2.3
Median nTPM: 12.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 21.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 21.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 20.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 18.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 17.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 17.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 17.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 16.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 16.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 16.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 16.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.7
FF:10153-102I9 76 years, female 57.1
FF:10169-103B7 60 years, female 54.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 10.5
Sample C Male 10.7
Sample D Male 11.8
Entorhinal cortex
nTPM: 10.9
Samples: 4

Max nTPM: 11.5
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 11.4
Sample C Male 11.5
Sample D Male 10.9
Subiculum
nTPM: 11.6
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.6
Sample A Female 11.9
Sample B Female 11.9
Sample C Male 10.6
Sample D Male 11.9
Ventral hippocampus
nTPM: 10.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.0
Sample A Female 9.6
Sample B Female 12.3
Sample C Male 8.0
Sample D Male 10.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.7
Samples: 4

Max nTPM: 6.7
Min nTPM: 6.6
Sample A Male 6.6
Sample B Male 6.7
Sample C Female 6.6
Sample D Female 6.7
Hippocampal formation
nTPM: 6.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.2
Sample A Male 7.1
Sample B Male 6.2
Sample C Female 6.3
Sample D Female 6.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
293239 Antisense, RP_040609_01_G09, Mouse strain C57BL/6J (56 days, male) 7.7
323593 Antisense, RP_040609_01_G09, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.