Single cell type - CTDP1 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CTDP1
Gene descriptionⁱ Full gene name according to HGNC.	CTD phosphatase subunit 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Enzymes Human disease related genes Metabolic proteins Potential drug targets
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Plasmacytoid DCs - Unknown function (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Group enriched (Late spermatids, Early spermatids)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Immune cell enhanced (eosinophil)
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in some
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Group enriched (Late spermatids, Early spermatids)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

CTDP1 is part of cluster 65 Plasmacytoid DCs - Unknown function with confidenceⁱ 1
144 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
SLC15A4	Solute carrier family 15 member 4	0.6781	65
SLC35E1	Solute carrier family 35 member E1	0.6726	65
TENT4A	Terminal nucleotidyltransferase 4A	0.6678	65
H4C4	H4 clustered histone 4	0.6625	65
BCL2L11	BCL2 like 11	0.6587	65
POLB	DNA polymerase beta	0.6568	65
VASH2	Vasohibin 2	0.6464	65
SMIM41	Small integral membrane protein 41	0.6431	65
IRF4	Interferon regulatory factor 4	0.6254	65
MED26	Mediator complex subunit 26	0.6195	65
NIBAN3	Niban apoptosis regulator 3	0.6195	65
H2AC16	H2A clustered histone 16	0.6166	24
CXCR3	C-X-C motif chemokine receptor 3	0.6068	65
OR5B21	Olfactory receptor family 5 subfamily B member 21	0.5903	65
SFT2D2	SFT2 domain containing 2	0.5762	65

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	7.4 nTPM
Adipose tissue	8.0 nTPM
Breast	6.8 nTPM

Alveolar cells type 1	0.0 nTPM
Lung	0.0 nTPM

Alveolar cells type 2	4.1 nTPM
Lung	4.1 nTPM

Astrocytes	3.6 nTPM
Brain	3.6 nTPM

B-cells	9.2 nTPM
Adipose tissue	16.5 nTPM
Lymph node	12.2 nTPM
Stomach	11.3 nTPM
Bone marrow	10.6 nTPM
Spleen	9.3 nTPM
Liver	9.2 nTPM
PBMC	8.5 nTPM
Breast	6.6 nTPM
Kidney	4.8 nTPM
Colon	3.2 nTPM

Dendritic cells	24.2 nTPM
Adipose tissue	58.0 nTPM
Breast	14.6 nTPM
PBMC	0.0 nTPM

Endothelial cells	7.5 nTPM
Eye	12.9 nTPM
Ovary	11.7 nTPM
Esophagus	11.3 nTPM
Skeletal muscle	10.1 nTPM
Lung	9.3 nTPM
Endometrium	9.1 nTPM
Heart muscle	7.9 nTPM
Breast	6.0 nTPM
Prostate	5.9 nTPM
Skin	5.8 nTPM
Testis	5.7 nTPM
Liver	4.6 nTPM
Placenta	4.6 nTPM
Pancreas	0.0 nTPM

Fibroblasts	4.8 nTPM
Skeletal muscle	8.3 nTPM
Prostate	7.2 nTPM
Ovary	6.2 nTPM
Stomach	6.0 nTPM
Placenta	5.8 nTPM
Esophagus	5.0 nTPM
Skin	4.4 nTPM
Adipose tissue	4.3 nTPM
Breast	4.1 nTPM
Heart muscle	1.7 nTPM
Lung	0.0 nTPM

Intestinal goblet cells	16.6 nTPM
Colon	21.5 nTPM
Rectum	19.5 nTPM
Small intestine	8.8 nTPM

Macrophages	13.8 nTPM
Adipose tissue	28.6 nTPM
Skeletal muscle	22.2 nTPM
Spleen	18.6 nTPM
Endometrium	18.1 nTPM
Bone marrow	16.3 nTPM
Stomach	14.7 nTPM
Ovary	13.7 nTPM
Esophagus	12.6 nTPM
Testis	12.2 nTPM
Lung	12.0 nTPM
Prostate	11.5 nTPM
Breast	10.6 nTPM
Kidney	8.3 nTPM
Pancreas	7.7 nTPM
PBMC	0.0 nTPM

Paneth cells	14.9 nTPM
Rectum	17.0 nTPM
Colon	16.5 nTPM
Small intestine	11.3 nTPM

Plasma cells	15.2 nTPM
Adipose tissue	32.2 nTPM
Esophagus	12.3 nTPM
Bone marrow	11.5 nTPM
Spleen	11.1 nTPM
Stomach	8.7 nTPM

Respiratory ciliated cells	9.6 nTPM
Bronchus	12.0 nTPM
Lung	7.3 nTPM

Smooth muscle cells	7.4 nTPM
Esophagus	12.4 nTPM
Ovary	11.1 nTPM
Heart muscle	10.6 nTPM
Pancreas	9.5 nTPM
Endometrium	8.1 nTPM
Skeletal muscle	7.7 nTPM
Skin	5.2 nTPM
Breast	5.2 nTPM
Prostate	5.0 nTPM
Adipose tissue	4.6 nTPM
Bronchus	1.9 nTPM

T-cells	18.3 nTPM
Endometrium	36.5 nTPM
Adipose tissue	33.7 nTPM
Colon	29.5 nTPM
Skeletal muscle	29.1 nTPM
Ovary	28.9 nTPM
Stomach	23.1 nTPM
Breast	17.9 nTPM
PBMC	15.2 nTPM
Lymph node	14.8 nTPM
Liver	14.7 nTPM
Skin	14.7 nTPM
Bone marrow	13.8 nTPM
Spleen	13.6 nTPM
Esophagus	13.1 nTPM
Kidney	8.9 nTPM
Lung	4.5 nTPM
Prostate	0.0 nTPM

Basal respiratory cells	4.0 nTPM
Bronchus	4.0 nTPM

Basal squamous epithelial cells	11.4 nTPM
Esophagus	11.4 nTPM

Collecting duct cells	3.7 nTPM
Kidney	3.7 nTPM

Distal enterocytes	20.0 nTPM
Rectum	22.6 nTPM
Colon	17.4 nTPM

Undifferentiated cells	11.7 nTPM
Rectum	14.9 nTPM
Colon	12.7 nTPM
Small intestine	7.6 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC