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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA:18.9 nTPM
GTEx:10.3 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:6.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.1
2666 Male, age 74, left hemisphere 19.8
2219 Male, age 76, both hemispheres 10.8
2411 Female, age 72, unknown 10.1
1827 Male, age 72, unknown 8.1
1833 Male, age 53, unknown 7.3
1870 Female, age 42, unknown 7.2
2828 Female, age 72, unknown 7.1
1830 Male, age 51, unknown 5.8
2586 Male, age 75, left hemisphere 5.2
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 8.8
2047 Male, age 72, unknown 12.5
2298 Female, age 72, unknown 10.2
2750 Male, age 76, both hemispheres 8.0
1828 Male, age 53, unknown 7.8
2016 Female, age 72, unknown 5.6
Inferior colliculus
nTPM: 8.1
2097 Female, age 72, unknown 9.2
2849 Male, age 72, unknown 8.8
1848 Female, age 42, unknown 7.5
1890 Male, age 53, unknown 6.8
Median raphe nucleus
nTPM: 12.5
2220 Male, age 76, midline 12.5
Pedunculopontine tegmental nucleus
nTPM: 7.6
1921 Female, age 85, both hemispheres 9.9
2334 Male, age 80, both hemispheres 7.0
2338 Male, age 61, both hemispheres 5.9
Periaquaductal grey, anterior
nTPM: 18.9
1947 Male, age 18, unknown 28.4
1795 Male, age 51, unknown 14.5
2502 Female, age 75, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 7.1
1840 Male, age 53, unknown 9.0
2464 Female, age 72, unknown 8.8
2850 Male, age 76, both hemispheres 5.8
1831 Male, age 72, unknown 5.0
Periaquaductal grey, lateral
nTPM: 7.5
2053 Male, age 18, unknown 10.8
2140 Male, age 76, both hemispheres 6.5
2272 Male, age 74, both hemispheres 5.2
Pretectal area
nTPM: 6.0
2825 Male, age 18, unknown 14.8
2224 Female, age 72, unknown 9.5
2667 Female, age 75, unknown 7.7
2316 Male, age 76, right hemisphere 6.1
1816 Male, age 51, unknown 6.0
1944 Female, age 72, unknown 5.8
2407 Male, age 75, both hemispheres 4.8
2273 Male, age 74, both hemispheres 4.6
2007 Male, age 72, unknown 3.9
1815 Male, age 53, unknown 2.9
1817 Female, age 42, unknown 0.2
Red nucleus
nTPM: 3.1
2584 Male, age 75, left hemisphere 6.6
2725 Female, age 75, unknown 5.4
2227 Male, age 72, unknown 4.4
2769 Male, age 72, unknown 4.1
1954 Female, age 42, unknown 3.3
2588 Male, age 74, left hemisphere 3.1
1821 Female, age 72, unknown 2.4
2503 Female, age 72, unknown 2.3
2823 Male, age 76, right hemisphere 2.3
1904 Male, age 53, unknown 1.8
1865 Male, age 51, unknown 1.3
2785 Male, age 18, unknown 0.0
Substantia nigra
nTPM: 12.6
1941 Male, age 53, unknown 24.3
1916 Female, age 42, unknown 18.6
2699 Male, age 18, unknown 14.9
1851 Male, age 51, unknown 14.8
2665 Male, age 74, both hemispheres 14.8
2241 Male, age 72, unknown 14.4
2409 Female, age 72, unknown 7.6
2590 Female, age 75, unknown 6.3
1889 Female, age 72, unknown 6.0
2583 Male, age 75, right hemisphere 3.7
Superior colliculus
nTPM: 6.1
2261 Male, age 18, unknown 11.6
1839 Male, age 51, unknown 7.4
1796 Male, age 53, unknown 7.1
2668 Female, age 75, unknown 6.5
1895 Male, age 76, right hemisphere 5.9
2087 Female, age 72, unknown 5.9
2664 Male, age 75, both hemispheres 5.7
2587 Male, age 74, left hemisphere 5.6
1913 Female, age 42, unknown 4.3
1995 Male, age 72, unknown 1.1
Ventral tegmental area
nTPM: 10.7
2410 Female, age 72, unknown 14.1
1915 Female, age 42, unknown 14.0
2218 Male, age 76, both hemispheres 13.7
1942 Male, age 51, unknown 11.6
2021 Male, age 53, unknown 6.3
2223 Female, age 72, unknown 4.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 41.7
Min nTPM: 2.0
Std nTPM: 6.3
Median nTPM: 8.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 29.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 26.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 24.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 22.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 20.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 19.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 19.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.6
FF:10158-103A5 76 years, female 4.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 7.6
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 7.6
Sample C Male 3.8
Sample D Male 4.3
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 7.4
Min nTPM: 5.4
Sample B Female 5.6
Sample C Male 7.4
Sample D Male 5.4
Substantia nigra
nTPM: 13.3
Samples: 4

Max nTPM: 23.0
Min nTPM: 1.8
Sample A Female 15.7
Sample B Female 12.8
Sample C Male 23.0
Sample D Male 1.8
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 19.4
Min nTPM: 4.2
Sample A Female 7.6
Sample B Female 19.4
Sample C Male 4.2
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.4
Sample A Male 7.2
Sample B Male 6.6
Sample C Female 6.4
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
858 Antisense, RP_Baylor_102988, Mouse strain C57BL/6J (56 days, male) 0.5
859 Antisense, RP_Baylor_102988, Mouse strain C57BL/6J (56 days, male) 0.0
860 Sense, RPS_Baylor_37030, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.