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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:14.5 nTPM
HPA:14.5 nTPM
GTEx:14.5 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:37.7 nTPM
Allen mouse:2.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006294Antibody HPA022046
Glial cells MediumNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.5
Sample id Sample description nTPM
Hippocampus
nTPM: 5.7
2621 Female, age 67, right hemisphere 11.0
1911 Female, age 85, right hemisphere 9.3
1855 Male, age 76, left hemisphere 6.1
2529 Female, age 94, left hemisphere 3.5
1898 Male, age 80, left hemisphere 2.9
2148 Female, age 91, left hemisphere 1.2
Dentate gyrus
nTPM: 3.9
1927 Female, age 91, both hemispheres 6.4
2010 Male, age 76, both hemispheres 6.3
2530 Female, age 94, left hemisphere 4.8
2246 Female, age 85, both hemispheres 4.4
2531 Female, age 67, both hemispheres 1.5
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 14.5
2613 Female, age 94, left hemisphere 34.2
1787 Male, age 76, left hemisphere 18.4
1938 Female, age 85, left hemisphere 15.8
2686 Male, age 75, right hemisphere 9.7
2764 Male, age 80, right hemisphere 7.1
2117 Female, age 91, right hemisphere 1.8
Hippocampus, CA1
nTPM: 9.9
2749 Male, age 80, left hemisphere 28.8
2045 Male, age 76, both hemispheres 7.6
2527 Male, age 74, both hemispheres 7.3
1873 Female, age 85, both hemispheres 3.7
2082 Female, age 91, right hemisphere 1.9
Hippocampus, CA2
nTPM: 7.2
1940 Female, age 85, left hemisphere 14.0
1963 Male, age 80, left hemisphere 8.9
1892 Male, age 76, both hemispheres 6.8
2437 Female, age 94, left hemisphere 5.5
2249 Male, age 74, both hemispheres 4.2
2113 Female, age 91, right hemisphere 3.9
Hippocampus, CA3
nTPM: 6.1
2137 Male, age 80, left hemisphere 17.5
1867 Male, age 76, both hemispheres 6.9
1891 Female, age 85, both hemispheres 4.7
2861 Female, age 67, both hemispheres 3.7
2436 Male, age 74, both hemispheres 2.3
2620 Female, age 94, left hemisphere 1.6
Parahippocampal cortex
nTPM: 9.4
1990 Female, age 91, right hemisphere 13.1
2622 Female, age 67, right hemisphere 12.8
2692 Male, age 74, both hemispheres 12.2
1933 Female, age 85, both hemispheres 10.1
2250 Female, age 67, right hemisphere 9.3
1850 Male, age 80, both hemispheres 9.2
2245 Female, age 91, both hemispheres 7.9
2532 Female, age 72, left hemisphere 7.7
2693 Female, age 94, both hemispheres 7.7
2018 Male, age 76, both hemispheres 4.5
Perirhinal gyrus
nTPM: 10.8
1847 Female, age 91, left hemisphere 16.4
1841 Female, age 85, right hemisphere 12.5
2521 Female, age 94, right hemisphere 11.5
1794 Male, age 80, right hemisphere 8.0
2848 Male, age 76, right hemisphere 5.8
Subiculum
nTPM: 6.6
1901 Male, age 80, both hemispheres 8.7
2438 Female, age 94, left hemisphere 8.6
2042 Male, age 76, both hemispheres 7.3
2619 Male, age 74, both hemispheres 7.2
1977 Female, age 85, both hemispheres 7.1
2729 Female, age 91, right hemisphere 0.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.5
Samples: 197

Max nTPM: 46.5
Min nTPM: 1.5
Std nTPM: 9.2
Median nTPM: 12.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 46.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 42.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 40.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 39.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 35.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 34.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 33.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 33.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 32.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 32.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 32.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.0
FF:10153-102I9 76 years, female 16.5
FF:10169-103B7 60 years, female 13.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 16.1
Samples: 4

Max nTPM: 22.5
Min nTPM: 11.2
Sample A Female 19.1
Sample B Female 11.7
Sample C Male 22.5
Sample D Male 11.2
Entorhinal cortex
nTPM: 36.3
Samples: 4

Max nTPM: 40.9
Min nTPM: 31.7
Sample A Female 40.9
Sample B Female 33.5
Sample C Male 39.2
Sample D Male 31.7
Subiculum
nTPM: 24.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 20.1
Sample A Female 32.4
Sample B Female 20.1
Sample C Male 23.8
Sample D Male 22.9
Ventral hippocampus
nTPM: 13.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 11.5
Sample C Male 18.5
Sample D Male 14.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 37.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.8
Samples: 4

Max nTPM: 46.4
Min nTPM: 32.9
Sample A Male 34.8
Sample B Male 36.9
Sample C Female 32.9
Sample D Female 46.4
Hippocampal formation
nTPM: 19.7
Samples: 4

Max nTPM: 25.4
Min nTPM: 14.2
Sample A Male 25.4
Sample B Male 19.2
Sample C Female 14.2
Sample D Female 19.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.3
69736388 Antisense, RP_050503_04_F10, Mouse strain C57BL/6J (56 days, male) 2.6
73994716 Antisense, RP_051214_03_E11, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.