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LIMCH1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:68.6 nTPM
HPA:68.6 nTPM
GTEx:61.7 nTPM
FANTOM5:150.9 Scaled Tags Per Million
Pig:84.9 nTPM
Mouse:30.1 nTPM
Allen mouse:9.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004184Antibody HPA063840
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.6
Sample id Sample description nTPM
Hippocampus
nTPM: 61.5
1911 Female, age 85, right hemisphere 67.6
2148 Female, age 91, left hemisphere 66.7
2621 Female, age 67, right hemisphere 63.7
2529 Female, age 94, left hemisphere 62.8
1898 Male, age 80, left hemisphere 54.5
1855 Male, age 76, left hemisphere 53.9
Dentate gyrus
nTPM: 62.8
2531 Female, age 67, both hemispheres 67.8
1927 Female, age 91, both hemispheres 67.3
2246 Female, age 85, both hemispheres 67.3
2530 Female, age 94, left hemisphere 65.5
2010 Male, age 76, both hemispheres 60.0
2528 Male, age 74, both hemispheres 49.1
Entorhinal gyrus
nTPM: 63.3
2764 Male, age 80, right hemisphere 73.1
2686 Male, age 75, right hemisphere 69.4
2117 Female, age 91, right hemisphere 68.0
1938 Female, age 85, left hemisphere 57.4
2613 Female, age 94, left hemisphere 56.4
1787 Male, age 76, left hemisphere 55.4
Hippocampus, CA1
nTPM: 68.6
2749 Male, age 80, left hemisphere 93.8
1873 Female, age 85, both hemispheres 70.7
2045 Male, age 76, both hemispheres 67.6
2082 Female, age 91, right hemisphere 55.7
2527 Male, age 74, both hemispheres 55.1
Hippocampus, CA2
nTPM: 61.1
1963 Male, age 80, left hemisphere 79.7
1940 Female, age 85, left hemisphere 63.0
1892 Male, age 76, both hemispheres 61.0
2113 Female, age 91, right hemisphere 58.3
2437 Female, age 94, left hemisphere 53.2
2249 Male, age 74, both hemispheres 51.6
Hippocampus, CA3
nTPM: 59.2
2137 Male, age 80, left hemisphere 70.0
1891 Female, age 85, both hemispheres 69.4
2620 Female, age 94, left hemisphere 66.9
1867 Male, age 76, both hemispheres 58.6
2861 Female, age 67, both hemispheres 54.4
2436 Male, age 74, both hemispheres 35.9
Parahippocampal cortex
nTPM: 59.9
2532 Female, age 72, left hemisphere 68.4
1933 Female, age 85, both hemispheres 67.3
1850 Male, age 80, both hemispheres 67.2
2245 Female, age 91, both hemispheres 66.5
2018 Male, age 76, both hemispheres 62.8
1990 Female, age 91, right hemisphere 58.4
2693 Female, age 94, both hemispheres 58.2
2692 Male, age 74, both hemispheres 57.2
2250 Female, age 67, right hemisphere 46.8
2622 Female, age 67, right hemisphere 46.6
Perirhinal gyrus
nTPM: 60.1
1794 Male, age 80, right hemisphere 66.5
2521 Female, age 94, right hemisphere 66.5
1841 Female, age 85, right hemisphere 57.0
1847 Female, age 91, left hemisphere 55.4
2848 Male, age 76, right hemisphere 55.1
Subiculum
nTPM: 64.1
1901 Male, age 80, both hemispheres 80.9
2042 Male, age 76, both hemispheres 75.4
1977 Female, age 85, both hemispheres 63.9
2438 Female, age 94, left hemisphere 61.4
2729 Female, age 91, right hemisphere 54.7
2619 Male, age 74, both hemispheres 48.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 61.7
Samples: 197

Max nTPM: 150.3
Min nTPM: 12.9
Std nTPM: 23.4
Median nTPM: 55.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 150.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 147.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 138.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 128.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 124.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 122.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 118.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 117.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 116.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 113.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 108.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 150.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 150.9
FF:10169-103B7 60 years, female 170.5
FF:10153-102I9 76 years, female 131.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 84.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 84.9
Samples: 4

Max nTPM: 101.2
Min nTPM: 74.3
Sample A Female 101.2
Sample B Female 80.2
Sample C Male 83.9
Sample D Male 74.3
Entorhinal cortex
nTPM: 73.9
Samples: 4

Max nTPM: 75.9
Min nTPM: 71.8
Sample A Female 72.9
Sample B Female 74.8
Sample C Male 75.9
Sample D Male 71.8
Subiculum
nTPM: 72.2
Samples: 4

Max nTPM: 83.9
Min nTPM: 62.4
Sample A Female 83.9
Sample B Female 72.9
Sample C Male 62.4
Sample D Male 69.6
Ventral hippocampus
nTPM: 68.3
Samples: 4

Max nTPM: 88.6
Min nTPM: 59.7
Sample A Female 62.6
Sample B Female 59.7
Sample C Male 62.4
Sample D Male 88.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.6
Samples: 4

Max nTPM: 30.3
Min nTPM: 24.2
Sample A Male 30.3
Sample B Male 24.2
Sample C Female 27.4
Sample D Female 24.4
Hippocampal formation
nTPM: 30.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 26.7
Sample A Male 26.7
Sample B Male 32.2
Sample C Female 31.2
Sample D Female 30.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.3
69407534 Antisense, RP_050414_01_H02, Mouse strain C57BL/6J (56 days, male) 9.3
71249084 Antisense, RP_050414_01_H02, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.