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LIMCH1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.9 nTPM
HPA:103.9 nTPM
GTEx:78.2 nTPM
FANTOM5:272.3 Scaled Tags Per Million
Pig:97.3 nTPM
Mouse:34.1 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.7
1833 Male, age 53, unknown 95.3
1830 Male, age 51, unknown 93.9
2666 Male, age 74, left hemisphere 89.0
2586 Male, age 75, left hemisphere 88.7
2411 Female, age 72, unknown 87.9
1870 Female, age 42, unknown 85.5
2019 Male, age 18, unknown 82.8
2828 Female, age 72, unknown 74.0
2219 Male, age 76, both hemispheres 65.1
1827 Male, age 72, unknown 64.7
Dorsal raphe nucleus
nTPM: 76.3
2750 Male, age 76, both hemispheres 90.5
2016 Female, age 72, unknown 82.5
2047 Male, age 72, unknown 73.0
1828 Male, age 53, unknown 72.7
2298 Female, age 72, unknown 62.7
Inferior colliculus
nTPM: 71.3
2849 Male, age 72, unknown 77.6
1890 Male, age 53, unknown 72.7
1848 Female, age 42, unknown 71.2
2097 Female, age 72, unknown 63.7
Median raphe nucleus
nTPM: 66.9
2220 Male, age 76, midline 66.9
Pedunculopontine tegmental nucleus
nTPM: 71.6
2334 Male, age 80, both hemispheres 79.5
1921 Female, age 85, both hemispheres 74.2
2338 Male, age 61, both hemispheres 60.9
Periaquaductal grey, anterior
nTPM: 62.1
2502 Female, age 75, unknown 71.7
1947 Male, age 18, unknown 61.0
1795 Male, age 51, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 62.7
2464 Female, age 72, unknown 73.8
1840 Male, age 53, unknown 63.7
1831 Male, age 72, unknown 56.8
2850 Male, age 76, both hemispheres 56.3
Periaquaductal grey, lateral
nTPM: 59.3
2053 Male, age 18, unknown 65.9
2272 Male, age 74, both hemispheres 57.9
2140 Male, age 76, both hemispheres 54.2
Pretectal area
nTPM: 60.9
1815 Male, age 53, unknown 72.1
2825 Male, age 18, unknown 69.9
2316 Male, age 76, right hemisphere 69.0
2407 Male, age 75, both hemispheres 68.8
1817 Female, age 42, unknown 64.0
2224 Female, age 72, unknown 58.2
2007 Male, age 72, unknown 56.1
2667 Female, age 75, unknown 55.2
2273 Male, age 74, both hemispheres 54.4
1944 Female, age 72, unknown 53.9
1816 Male, age 51, unknown 48.5
Red nucleus
nTPM: 103.9
1865 Male, age 51, unknown 120.3
1904 Male, age 53, unknown 118.0
2823 Male, age 76, right hemisphere 112.7
1821 Female, age 72, unknown 111.6
2227 Male, age 72, unknown 110.8
2503 Female, age 72, unknown 107.7
2769 Male, age 72, unknown 106.6
1954 Female, age 42, unknown 103.7
2588 Male, age 74, left hemisphere 95.2
2785 Male, age 18, unknown 91.4
2725 Female, age 75, unknown 88.1
2584 Male, age 75, left hemisphere 81.4
Substantia nigra
nTPM: 78.2
2699 Male, age 18, unknown 87.2
2409 Female, age 72, unknown 84.2
1851 Male, age 51, unknown 82.5
2583 Male, age 75, right hemisphere 82.3
2590 Female, age 75, unknown 82.0
2241 Male, age 72, unknown 81.9
2665 Male, age 74, both hemispheres 78.0
1916 Female, age 42, unknown 73.0
1889 Female, age 72, unknown 69.6
1941 Male, age 53, unknown 61.9
Superior colliculus
nTPM: 72.5
1995 Male, age 72, unknown 87.4
1913 Female, age 42, unknown 84.4
1895 Male, age 76, right hemisphere 82.2
2587 Male, age 74, left hemisphere 80.3
1839 Male, age 51, unknown 76.0
2668 Female, age 75, unknown 75.0
2664 Male, age 75, both hemispheres 65.8
1796 Male, age 53, unknown 64.0
2261 Male, age 18, unknown 56.2
2087 Female, age 72, unknown 53.8
Ventral tegmental area
nTPM: 76.1
2223 Female, age 72, unknown 93.0
2410 Female, age 72, unknown 82.8
1915 Female, age 42, unknown 72.4
1942 Male, age 51, unknown 72.2
2218 Male, age 76, both hemispheres 69.4
2021 Male, age 53, unknown 66.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.2
Samples: 139

Max nTPM: 135.0
Min nTPM: 24.8
Std nTPM: 25.0
Median nTPM: 75.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 135.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 132.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 130.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 130.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 129.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 127.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 127.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 122.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 120.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 119.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 272.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 272.3
FF:10158-103A5 76 years, female 272.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.3
Pig sample Sample description nTPM
Midbrain
nTPM: 97.3
Samples: 4

Max nTPM: 138.1
Min nTPM: 77.8
Sample A Female 138.1
Sample B Female 92.4
Sample C Male 80.9
Sample D Male 77.8
Periaqueductal gray
nTPM: 73.1
Samples: 3

Max nTPM: 85.3
Min nTPM: 65.4
Sample B Female 85.3
Sample C Male 65.4
Sample D Male 68.5
Substantia nigra
nTPM: 90.6
Samples: 4

Max nTPM: 125.0
Min nTPM: 70.5
Sample A Female 84.6
Sample B Female 70.5
Sample C Male 82.3
Sample D Male 125.0
Superior colliculi
nTPM: 80.6
Samples: 4

Max nTPM: 96.1
Min nTPM: 48.9
Sample A Female 89.8
Sample B Female 48.9
Sample C Male 87.7
Sample D Male 96.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.0
Sample A Male 31.0
Sample B Male 33.6
Sample C Female 36.8
Sample D Female 35.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69407534 Antisense, RP_050414_01_H02, Mouse strain C57BL/6J (56 days, male) 2.2
71249084 Antisense, RP_050414_01_H02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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