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SPA17
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:2.8 nTPM
HPA:2.8 nTPM
GTEx:13.0 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:8.9 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037568
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 2.8
Sample id Sample description nTPM
Hippocampus
nTPM: 2.4
1855 Male, age 76, left hemisphere 2.6
2529 Female, age 94, left hemisphere 2.5
2621 Female, age 67, right hemisphere 2.4
1898 Male, age 80, left hemisphere 2.3
1911 Female, age 85, right hemisphere 2.3
2148 Female, age 91, left hemisphere 2.2
Dentate gyrus
nTPM: 2.5
2528 Male, age 74, both hemispheres 2.7
2010 Male, age 76, both hemispheres 2.6
2246 Female, age 85, both hemispheres 2.5
2531 Female, age 67, both hemispheres 2.5
1927 Female, age 91, both hemispheres 2.3
2530 Female, age 94, left hemisphere 2.3
Entorhinal gyrus
nTPM: 2.2
1938 Female, age 85, left hemisphere 2.4
2613 Female, age 94, left hemisphere 2.4
1787 Male, age 76, left hemisphere 2.2
2117 Female, age 91, right hemisphere 2.2
2764 Male, age 80, right hemisphere 2.1
2686 Male, age 75, right hemisphere 2.0
Hippocampus, CA1
nTPM: 2.5
2082 Female, age 91, right hemisphere 3.1
2045 Male, age 76, both hemispheres 2.5
1873 Female, age 85, both hemispheres 2.4
2527 Male, age 74, both hemispheres 2.4
2749 Male, age 80, left hemisphere 2.3
Hippocampus, CA2
nTPM: 2.8
2249 Male, age 74, both hemispheres 4.0
1940 Female, age 85, left hemisphere 3.1
2113 Female, age 91, right hemisphere 2.7
1892 Male, age 76, both hemispheres 2.5
2437 Female, age 94, left hemisphere 2.5
1963 Male, age 80, left hemisphere 1.9
Hippocampus, CA3
nTPM: 2.6
2436 Male, age 74, both hemispheres 4.3
2620 Female, age 94, left hemisphere 2.6
2137 Male, age 80, left hemisphere 2.5
2861 Female, age 67, both hemispheres 2.2
1867 Male, age 76, both hemispheres 2.1
1891 Female, age 85, both hemispheres 2.0
Parahippocampal cortex
nTPM: 2.3
2245 Female, age 91, both hemispheres 2.6
2018 Male, age 76, both hemispheres 2.5
2250 Female, age 67, right hemisphere 2.4
1990 Female, age 91, right hemisphere 2.3
2693 Female, age 94, both hemispheres 2.3
2532 Female, age 72, left hemisphere 2.2
2692 Male, age 74, both hemispheres 2.2
1850 Male, age 80, both hemispheres 2.1
1933 Female, age 85, both hemispheres 2.1
2622 Female, age 67, right hemisphere 2.1
Perirhinal gyrus
nTPM: 2.2
2848 Male, age 76, right hemisphere 2.5
1841 Female, age 85, right hemisphere 2.3
1847 Female, age 91, left hemisphere 2.3
1794 Male, age 80, right hemisphere 2.1
2521 Female, age 94, right hemisphere 2.0
Subiculum
nTPM: 2.2
2729 Female, age 91, right hemisphere 2.5
2438 Female, age 94, left hemisphere 2.3
1901 Male, age 80, both hemispheres 2.2
2042 Male, age 76, both hemispheres 2.2
2619 Male, age 74, both hemispheres 2.2
1977 Female, age 85, both hemispheres 2.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.0
Samples: 197

Max nTPM: 68.6
Min nTPM: 2.7
Std nTPM: 8.1
Median nTPM: 11.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 68.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 50.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 41.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 36.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 35.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 34.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 32.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 30.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 30.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 26.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.3
FF:10169-103B7 60 years, female 18.8
FF:10153-102I9 76 years, female 17.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.8
Samples: 4

Max nTPM: 6.6
Min nTPM: 3.4
Sample A Female 6.6
Sample B Female 4.2
Sample C Male 4.9
Sample D Male 3.4
Entorhinal cortex
nTPM: 2.4
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.8
Sample A Female 2.4
Sample B Female 3.4
Sample C Male 2.1
Sample D Male 1.8
Subiculum
nTPM: 2.5
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.5
Sample A Female 3.8
Sample B Female 2.3
Sample C Male 1.5
Sample D Male 2.4
Ventral hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.4
Sample A Female 4.1
Sample B Female 2.4
Sample C Male 3.3
Sample D Male 5.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.8
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.3
Sample A Male 6.8
Sample B Male 6.3
Sample C Female 7.5
Sample D Female 6.5
Hippocampal formation
nTPM: 9.0
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.2
Sample A Male 7.8
Sample B Male 9.5
Sample C Female 7.2
Sample D Female 11.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69117152 Antisense, RP_050321_01_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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