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SNX24
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.6 nTPM
HPA:15.6 nTPM
GTEx:20.9 nTPM
FANTOM5:65.2 Scaled Tags Per Million
Pig:26.9 nTPM
Mouse:17.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2019 Male, age 18, unknown 15.8
2411 Female, age 72, unknown 15.7
1833 Male, age 53, unknown 14.8
1830 Male, age 51, unknown 14.5
1870 Female, age 42, unknown 13.8
2219 Male, age 76, both hemispheres 13.6
1827 Male, age 72, unknown 13.1
2586 Male, age 75, left hemisphere 13.1
2666 Male, age 74, left hemisphere 13.0
2828 Female, age 72, unknown 12.2
Dorsal raphe nucleus
nTPM: 12.9
2750 Male, age 76, both hemispheres 15.5
1828 Male, age 53, unknown 14.0
2047 Male, age 72, unknown 12.1
2016 Female, age 72, unknown 11.9
2298 Female, age 72, unknown 11.1
Inferior colliculus
nTPM: 13.1
1890 Male, age 53, unknown 14.2
2097 Female, age 72, unknown 13.9
1848 Female, age 42, unknown 12.5
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Pedunculopontine tegmental nucleus
nTPM: 14.7
2338 Male, age 61, both hemispheres 15.1
2334 Male, age 80, both hemispheres 15.0
1921 Female, age 85, both hemispheres 13.8
Periaquaductal grey, anterior
nTPM: 12.6
2502 Female, age 75, unknown 13.1
1947 Male, age 18, unknown 12.5
1795 Male, age 51, unknown 12.2
Periaquaductal grey, dorsal
nTPM: 12.1
1831 Male, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 12.7
2464 Female, age 72, unknown 11.8
1840 Male, age 53, unknown 10.9
Periaquaductal grey, lateral
nTPM: 12.4
2053 Male, age 18, unknown 12.7
2272 Male, age 74, both hemispheres 12.4
2140 Male, age 76, both hemispheres 12.2
Pretectal area
nTPM: 14.0
1944 Female, age 72, unknown 18.5
1816 Male, age 51, unknown 16.4
1817 Female, age 42, unknown 16.1
1815 Male, age 53, unknown 16.0
2007 Male, age 72, unknown 15.5
2667 Female, age 75, unknown 13.4
2273 Male, age 74, both hemispheres 13.1
2407 Male, age 75, both hemispheres 11.5
2825 Male, age 18, unknown 11.5
2224 Female, age 72, unknown 11.0
2316 Male, age 76, right hemisphere 10.9
Red nucleus
nTPM: 15.6
1821 Female, age 72, unknown 17.2
2588 Male, age 74, left hemisphere 17.2
1954 Female, age 42, unknown 16.8
1865 Male, age 51, unknown 15.9
1904 Male, age 53, unknown 15.7
2769 Male, age 72, unknown 15.7
2785 Male, age 18, unknown 15.4
2227 Male, age 72, unknown 15.3
2823 Male, age 76, right hemisphere 15.1
2584 Male, age 75, left hemisphere 14.6
2503 Female, age 72, unknown 14.2
2725 Female, age 75, unknown 14.0
Substantia nigra
nTPM: 15.5
1916 Female, age 42, unknown 17.5
1889 Female, age 72, unknown 17.2
2241 Male, age 72, unknown 16.7
1941 Male, age 53, unknown 16.1
1851 Male, age 51, unknown 16.0
2699 Male, age 18, unknown 15.2
2590 Female, age 75, unknown 15.0
2583 Male, age 75, right hemisphere 14.4
2409 Female, age 72, unknown 14.0
2665 Male, age 74, both hemispheres 12.9
Superior colliculus
nTPM: 13.4
2087 Female, age 72, unknown 15.5
2668 Female, age 75, unknown 14.9
1913 Female, age 42, unknown 14.6
2587 Male, age 74, left hemisphere 14.3
2261 Male, age 18, unknown 14.1
1895 Male, age 76, right hemisphere 13.5
1995 Male, age 72, unknown 12.7
1839 Male, age 51, unknown 11.8
2664 Male, age 75, both hemispheres 11.6
1796 Male, age 53, unknown 11.3
Ventral tegmental area
nTPM: 15.1
2218 Male, age 76, both hemispheres 17.1
2410 Female, age 72, unknown 17.0
2223 Female, age 72, unknown 16.6
1915 Female, age 42, unknown 13.9
1942 Male, age 51, unknown 13.4
2021 Male, age 53, unknown 12.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 36.3
Min nTPM: 10.1
Std nTPM: 4.6
Median nTPM: 20.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 36.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 33.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 33.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 31.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 30.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 29.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 27.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 27.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.2
FF:10158-103A5 76 years, female 65.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 34.2
Min nTPM: 20.3
Sample A Female 28.3
Sample B Female 20.6
Sample C Male 34.2
Sample D Male 20.3
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 24.2
Min nTPM: 21.5
Sample B Female 21.5
Sample C Male 24.2
Sample D Male 22.3
Substantia nigra
nTPM: 21.0
Samples: 4

Max nTPM: 26.7
Min nTPM: 18.3
Sample A Female 26.7
Sample B Female 19.0
Sample C Male 19.8
Sample D Male 18.3
Superior colliculi
nTPM: 26.9
Samples: 4

Max nTPM: 34.4
Min nTPM: 23.7
Sample A Female 24.0
Sample B Female 25.5
Sample C Male 34.4
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.5
Sample A Male 18.3
Sample B Male 17.6
Sample C Female 17.4
Sample D Female 16.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68797637 Antisense, RP_050210_02_H02, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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