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AP3D1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA:39.0 nTPM
GTEx:31.8 nTPM
FANTOM5:104.1 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:64.4 nTPM
Allen mouse:5.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.1
2846 Female, age 79, unknown 38.1
1781 Male, age 74, unknown 36.4
1857 Female, age 85, left hemisphere 35.8
2290 Female, age 72, unknown 35.3
1854 Male, age 80, left hemisphere 33.3
2289 Male, age 61, right hemisphere 30.0
2288 Male, age 75, left hemisphere 28.2
2481 Female, age 94, left hemisphere 27.7
Claustrum
nTPM: 37.2
2645 Female, age 72, unknown 41.6
2198 Male, age 80, both hemispheres 41.5
2568 Male, age 61, both hemispheres 40.7
2284 Female, age 91, both hemispheres 39.7
2491 Male, age 75, both hemispheres 38.0
2196 Female, age 79, unknown 37.0
1956 Male, age 74, unknown 33.5
2292 Female, age 85, both hemispheres 32.8
2392 Female, age 94, both hemispheres 29.7
Globus pallidus, externus
nTPM: 28.1
2646 Male, age 61, right hemisphere 35.1
2567 Female, age 72, unknown 32.9
2395 Male, age 75, both hemispheres 26.9
2772 Female, age 79, unknown 23.0
1996 Male, age 80, right hemisphere 22.7
Globus pallidus, internus
nTPM: 25.8
2483 Female, age 94, right hemisphere 34.6
2566 Female, age 72, unknown 29.2
2287 Male, age 75, right hemisphere 26.7
1818 Male, age 74, unknown 25.6
2037 Male, age 80, right hemisphere 22.9
2778 Female, age 91, both hemispheres 20.9
2111 Female, age 85, right hemisphere 20.7
Nucleus accumbens
nTPM: 29.8
1856 Female, age 91, right hemisphere 37.2
1783 Male, age 74, unknown 37.1
1806 Female, age 85, left hemisphere 36.3
2698 Female, age 72, unknown 30.6
2824 Male, age 61, right hemisphere 26.9
2286 Male, age 75, left hemisphere 25.3
2732 Male, age 80, right hemisphere 23.4
2391 Female, age 94, left hemisphere 21.8
Nucleus basalis of Meynert
nTPM: 30.1
2569 Male, age 61, both hemispheres 35.7
2484 Female, age 94, left hemisphere 31.6
2393 Male, age 80, right hemisphere 27.1
2821 Male, age 75, both hemispheres 26.0
Nucleus of the diagonal band
nTPM: 37.3
2195 Female, age 85, both hemispheres 46.4
2775 Male, age 80, right hemisphere 41.3
1812 Female, age 91, both hemispheres 37.9
1979 Male, age 74, unknown 30.9
2029 Male, age 61, right hemisphere 30.1
Olfactory tubercle
nTPM: 39.0
2487 Female, age 94, left hemisphere 43.0
1998 Female, age 91, both hemispheres 41.8
1846 Male, age 80, right hemisphere 37.5
2856 Male, age 75, right hemisphere 33.7
Putamen
nTPM: 37.1
2466 Female, age 79, unknown 41.8
2489 Female, age 72, unknown 41.5
2647 Male, age 75, left hemisphere 39.7
1829 Male, age 74, unknown 38.8
1838 Male, age 80, right hemisphere 36.5
2482 Female, age 94, left hemisphere 31.9
1937 Female, age 91, right hemisphere 29.7
Septal nuclei
nTPM: 35.8
1960 Male, age 74, unknown 46.6
2031 Female, age 72, unknown 41.2
2059 Female, age 85, both hemispheres 36.0
2629 Female, age 94, right hemisphere 35.3
2009 Female, age 91, both hemispheres 32.8
2394 Male, age 61, left hemisphere 30.6
2199 Male, age 80, right hemisphere 27.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.6
Samples: 246

Max nTPM: 48.2
Min nTPM: 15.0
Std nTPM: 6.5
Median nTPM: 30.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 48.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 46.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 46.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 45.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 44.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 43.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 43.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 42.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 42.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 42.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 41.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.8
Samples: 246

Max nTPM: 48.2
Min nTPM: 6.4
Std nTPM: 8.2
Median nTPM: 32.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 48.2
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 48.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 47.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 47.0
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 46.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 46.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 45.6
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 45.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 44.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 44.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 44.3
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Brain - Putamen (basal ganglia)
Average nTPM: 30.6
Samples: 205

Max nTPM: 48.8
Min nTPM: 16.6
Std nTPM: 6.4
Median nTPM: 30.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 48.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 46.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 44.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 44.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 43.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 43.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 42.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 42.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 41.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 41.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 41.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 94.6
FF:10164-103B2 76 years, female 94.6
Globus pallidus
Scaled Tags Per Million: 78.0
FF:10175-103C4 60 years, female 84.4
FF:10161-103A8 76 years, female 71.7
Nucleus accumbens
Scaled Tags Per Million: 104.1
FF:10037-101F1 23-56 years, mixed 104.1
Putamen
Scaled Tags Per Million: 95.1
FF:10176-103C5 60 years, female 95.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Caudate
nTPM: 29.4
Samples: 4

Max nTPM: 34.0
Min nTPM: 25.2
Sample A Female 25.2
Sample B Female 30.8
Sample C Male 34.0
Sample D Male 27.6
Putamen
nTPM: 27.3
Samples: 4

Max nTPM: 33.4
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 24.3
Sample C Male 33.4
Sample D Male 28.7
Septum
nTPM: 28.5
Samples: 4

Max nTPM: 33.8
Min nTPM: 24.2
Sample A Female 28.3
Sample B Female 27.5
Sample C Male 33.8
Sample D Male 24.2
Ventral pallidum
nTPM: 28.6
Samples: 4

Max nTPM: 35.3
Min nTPM: 25.6
Sample A Female 26.9
Sample B Female 26.7
Sample C Male 35.3
Sample D Male 25.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 58.9
Samples: 4

Max nTPM: 62.5
Min nTPM: 57.3
Sample A Male 57.3
Sample B Male 57.6
Sample C Female 58.0
Sample D Female 62.5
Septum
nTPM: 62.8
Samples: 4

Max nTPM: 65.5
Min nTPM: 59.8
Sample A Male 65.1
Sample B Male 60.6
Sample C Female 59.8
Sample D Female 65.5
Ventral forebrain
nTPM: 64.4
Samples: 4

Max nTPM: 67.0
Min nTPM: 59.4
Sample A Male 59.4
Sample B Male 66.8
Sample C Female 64.3
Sample D Female 67.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.2
68924799 Antisense, RP_050309_01_A07, Mouse strain C57BL/6J (56 days, male) 5.2
Pallidum
Expression energy: 4.8
68924799 Antisense, RP_050309_01_A07, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.