ABOUTMENU
HELP
NEWS
ZC3H15
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.0 nTPM
HPA:42.0 nTPM
GTEx:34.7 nTPM
FANTOM5:197.1 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:64.7 nTPM
Allen mouse:6.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031099Antibody HPA031100Antibody HPA031101
Glial cells LowLowLow
Neuronal cells MediumMediumMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
2846 Female, age 79, unknown 42.4
2481 Female, age 94, left hemisphere 41.1
1857 Female, age 85, left hemisphere 38.9
1781 Male, age 74, unknown 38.3
2290 Female, age 72, unknown 38.2
2288 Male, age 75, left hemisphere 37.9
1854 Male, age 80, left hemisphere 37.5
2289 Male, age 61, right hemisphere 34.6
Claustrum
nTPM: 39.1
1956 Male, age 74, unknown 41.8
2392 Female, age 94, both hemispheres 41.4
2196 Female, age 79, unknown 40.7
2198 Male, age 80, both hemispheres 40.2
2491 Male, age 75, both hemispheres 38.9
2568 Male, age 61, both hemispheres 38.7
2292 Female, age 85, both hemispheres 37.2
2284 Female, age 91, both hemispheres 36.3
2645 Female, age 72, unknown 36.3
Globus pallidus, externus
nTPM: 36.1
2395 Male, age 75, both hemispheres 40.5
2772 Female, age 79, unknown 39.9
1996 Male, age 80, right hemisphere 34.8
2567 Female, age 72, unknown 32.8
2646 Male, age 61, right hemisphere 32.4
Globus pallidus, internus
nTPM: 37.0
2287 Male, age 75, right hemisphere 41.7
2483 Female, age 94, right hemisphere 40.2
2778 Female, age 91, both hemispheres 37.3
1818 Male, age 74, unknown 37.1
2037 Male, age 80, right hemisphere 35.3
2566 Female, age 72, unknown 34.6
2111 Female, age 85, right hemisphere 32.8
Nucleus accumbens
nTPM: 39.3
2391 Female, age 94, left hemisphere 42.6
1856 Female, age 91, right hemisphere 42.4
2698 Female, age 72, unknown 42.0
2286 Male, age 75, left hemisphere 39.5
1783 Male, age 74, unknown 38.9
2824 Male, age 61, right hemisphere 37.8
1806 Female, age 85, left hemisphere 37.2
2732 Male, age 80, right hemisphere 33.8
Nucleus basalis of Meynert
nTPM: 36.6
2821 Male, age 75, both hemispheres 39.8
2484 Female, age 94, left hemisphere 37.1
2393 Male, age 80, right hemisphere 36.8
2569 Male, age 61, both hemispheres 32.7
Nucleus of the diagonal band
nTPM: 42.0
1812 Female, age 91, both hemispheres 45.8
2775 Male, age 80, right hemisphere 44.6
2195 Female, age 85, both hemispheres 43.3
1979 Male, age 74, unknown 38.3
2029 Male, age 61, right hemisphere 38.2
Olfactory tubercle
nTPM: 39.9
1846 Male, age 80, right hemisphere 42.4
1998 Female, age 91, both hemispheres 40.3
2487 Female, age 94, left hemisphere 38.5
2856 Male, age 75, right hemisphere 38.4
Putamen
nTPM: 38.1
1838 Male, age 80, right hemisphere 40.6
2482 Female, age 94, left hemisphere 39.9
1829 Male, age 74, unknown 39.0
2466 Female, age 79, unknown 38.5
1937 Female, age 91, right hemisphere 37.4
2647 Male, age 75, left hemisphere 37.3
2489 Female, age 72, unknown 34.3
Septal nuclei
nTPM: 39.3
2031 Female, age 72, unknown 43.8
1960 Male, age 74, unknown 42.8
2629 Female, age 94, right hemisphere 42.4
2009 Female, age 91, both hemispheres 40.6
2199 Male, age 80, right hemisphere 36.4
2394 Male, age 61, left hemisphere 34.7
2059 Female, age 85, both hemispheres 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.1
Samples: 246

Max nTPM: 71.3
Min nTPM: 17.7
Std nTPM: 7.7
Median nTPM: 28.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 55.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 50.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 48.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 47.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 46.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 46.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 45.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.7
Samples: 246

Max nTPM: 57.2
Min nTPM: 13.6
Std nTPM: 9.2
Median nTPM: 34.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 57.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 54.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 54.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 54.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 53.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 53.3
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 53.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 52.9
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 52.6
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 51.8
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 51.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 56.5
Min nTPM: 19.1
Std nTPM: 6.6
Median nTPM: 28.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 56.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 50.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 47.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 47.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 46.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 44.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 44.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 43.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 42.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 42.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 42.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 197.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 140.2
FF:10164-103B2 76 years, female 140.2
Globus pallidus
Scaled Tags Per Million: 197.1
FF:10175-103C4 60 years, female 271.5
FF:10161-103A8 76 years, female 122.6
Nucleus accumbens
Scaled Tags Per Million: 103.2
FF:10037-101F1 23-56 years, mixed 103.2
Putamen
Scaled Tags Per Million: 188.1
FF:10176-103C5 60 years, female 188.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Caudate
nTPM: 16.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.2
Sample A Female 15.5
Sample B Female 14.2
Sample C Male 18.3
Sample D Male 16.0
Putamen
nTPM: 21.2
Samples: 4

Max nTPM: 34.6
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 18.5
Sample C Male 34.6
Sample D Male 18.0
Septum
nTPM: 16.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 14.4
Sample A Female 14.7
Sample B Female 14.4
Sample C Male 18.2
Sample D Male 16.7
Ventral pallidum
nTPM: 15.2
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.7
Sample A Female 16.3
Sample B Female 15.5
Sample C Male 16.3
Sample D Male 12.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.7
Samples: 4

Max nTPM: 59.9
Min nTPM: 47.1
Sample A Male 55.6
Sample B Male 47.1
Sample C Female 52.2
Sample D Female 59.9
Septum
nTPM: 64.7
Samples: 4

Max nTPM: 68.6
Min nTPM: 56.2
Sample A Male 67.3
Sample B Male 56.2
Sample C Female 66.8
Sample D Female 68.6
Ventral forebrain
nTPM: 60.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 60.0
Sample A Male 60.5
Sample B Male 62.2
Sample C Female 60.0
Sample D Female 60.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.5
70439190 Antisense, RP_050623_01_E06, Mouse strain C57BL/6J (56 days, male) 6.5
Pallidum
Expression energy: 6.6
70439190 Antisense, RP_050623_01_E06, Mouse strain C57BL/6J (56 days, male) 6.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.