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SLC9A7
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:41.6 nTPM
HPA:41.6 nTPM
GTEx:29.0 nTPM
FANTOM5:148.9 Scaled Tags Per Million
Pig:57.1 nTPM
Mouse:28.9 nTPM
Allen mouse:4.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA048938
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.0
1857 Female, age 85, left hemisphere 66.8
1854 Male, age 80, left hemisphere 57.0
2290 Female, age 72, unknown 47.0
2289 Male, age 61, right hemisphere 41.6
2846 Female, age 79, unknown 36.1
1781 Male, age 74, unknown 27.7
2288 Male, age 75, left hemisphere 22.5
2481 Female, age 94, left hemisphere 13.4
Claustrum
nTPM: 5.1
2196 Female, age 79, unknown 14.2
2568 Male, age 61, both hemispheres 6.5
2392 Female, age 94, both hemispheres 6.0
2284 Female, age 91, both hemispheres 5.6
2491 Male, age 75, both hemispheres 4.7
2198 Male, age 80, both hemispheres 4.6
2645 Female, age 72, unknown 2.9
1956 Male, age 74, unknown 1.4
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 1.7
2395 Male, age 75, both hemispheres 3.7
2772 Female, age 79, unknown 2.3
2646 Male, age 61, right hemisphere 1.5
2567 Female, age 72, unknown 0.8
1996 Male, age 80, right hemisphere 0.4
Globus pallidus, internus
nTPM: 1.8
2483 Female, age 94, right hemisphere 6.5
1818 Male, age 74, unknown 3.2
2287 Male, age 75, right hemisphere 1.2
2037 Male, age 80, right hemisphere 0.9
2566 Female, age 72, unknown 0.8
2111 Female, age 85, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 41.6
2824 Male, age 61, right hemisphere 73.0
1856 Female, age 91, right hemisphere 66.9
1806 Female, age 85, left hemisphere 61.4
1783 Male, age 74, unknown 53.2
2698 Female, age 72, unknown 32.6
2286 Male, age 75, left hemisphere 24.3
2732 Male, age 80, right hemisphere 12.0
2391 Female, age 94, left hemisphere 9.3
Nucleus basalis of Meynert
nTPM: 20.7
2393 Male, age 80, right hemisphere 40.2
2484 Female, age 94, left hemisphere 26.1
2821 Male, age 75, both hemispheres 12.0
2569 Male, age 61, both hemispheres 4.6
Nucleus of the diagonal band
nTPM: 8.5
1812 Female, age 91, both hemispheres 11.0
1979 Male, age 74, unknown 9.9
2775 Male, age 80, right hemisphere 7.8
2029 Male, age 61, right hemisphere 7.0
2195 Female, age 85, both hemispheres 6.8
Olfactory tubercle
nTPM: 6.2
2487 Female, age 94, left hemisphere 7.5
1998 Female, age 91, both hemispheres 6.9
1846 Male, age 80, right hemisphere 5.4
2856 Male, age 75, right hemisphere 5.0
Putamen
nTPM: 36.1
1838 Male, age 80, right hemisphere 70.6
1937 Female, age 91, right hemisphere 55.9
2466 Female, age 79, unknown 37.7
1829 Male, age 74, unknown 33.9
2489 Female, age 72, unknown 23.6
2647 Male, age 75, left hemisphere 15.9
2482 Female, age 94, left hemisphere 15.2
Septal nuclei
nTPM: 7.2
2394 Male, age 61, left hemisphere 8.9
1960 Male, age 74, unknown 8.5
2009 Female, age 91, both hemispheres 8.1
2031 Female, age 72, unknown 7.9
2629 Female, age 94, right hemisphere 6.2
2059 Female, age 85, both hemispheres 5.7
2199 Male, age 80, right hemisphere 5.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 57.7
Min nTPM: 2.8
Std nTPM: 11.3
Median nTPM: 21.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 57.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 54.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 49.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 48.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 47.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 45.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 44.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 44.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 44.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 44.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 73.1
Min nTPM: 2.2
Std nTPM: 14.7
Median nTPM: 29.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 73.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 71.8
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 65.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 61.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 60.8
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 59.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 55.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 55.1
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 52.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 52.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 51.7
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Brain - Putamen (basal ganglia)
Average nTPM: 19.2
Samples: 205

Max nTPM: 68.5
Min nTPM: 1.6
Std nTPM: 11.4
Median nTPM: 17.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 68.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 49.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 47.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 45.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 44.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 43.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 43.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 42.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 41.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 41.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 40.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 148.9
FF:10164-103B2 76 years, female 148.9
Globus pallidus
Scaled Tags Per Million: 31.8
FF:10175-103C4 60 years, female 51.3
FF:10161-103A8 76 years, female 12.4
Nucleus accumbens
Scaled Tags Per Million: 84.6
FF:10037-101F1 23-56 years, mixed 84.6
Putamen
Scaled Tags Per Million: 144.0
FF:10176-103C5 60 years, female 144.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 57.1
Pig sample Sample description nTPM
Caudate
nTPM: 57.1
Samples: 4

Max nTPM: 68.6
Min nTPM: 47.0
Sample A Female 47.0
Sample B Female 53.3
Sample C Male 68.6
Sample D Male 59.3
Putamen
nTPM: 51.8
Samples: 4

Max nTPM: 76.6
Min nTPM: 27.6
Sample A Female 27.6
Sample B Female 46.5
Sample C Male 76.6
Sample D Male 56.5
Septum
nTPM: 32.0
Samples: 4

Max nTPM: 45.9
Min nTPM: 12.4
Sample A Female 45.9
Sample B Female 36.8
Sample C Male 32.7
Sample D Male 12.4
Ventral pallidum
nTPM: 41.9
Samples: 4

Max nTPM: 57.9
Min nTPM: 32.1
Sample A Female 57.9
Sample B Female 32.1
Sample C Male 35.1
Sample D Male 42.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.0
Samples: 4

Max nTPM: 25.6
Min nTPM: 22.0
Sample A Male 24.1
Sample B Male 22.0
Sample C Female 24.2
Sample D Female 25.6
Septum
nTPM: 28.9
Samples: 4

Max nTPM: 36.1
Min nTPM: 22.7
Sample A Male 36.1
Sample B Male 22.7
Sample C Female 26.9
Sample D Female 29.8
Ventral forebrain
nTPM: 26.7
Samples: 4

Max nTPM: 34.7
Min nTPM: 21.3
Sample A Male 24.1
Sample B Male 34.7
Sample C Female 21.3
Sample D Female 26.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
68798139 Antisense, RP_050215_01_G12, Mouse strain C57BL/6J (56 days, male) 3.2
77278977 Antisense, RP_070116_01_A08, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 4.4
68798139 Antisense, RP_050215_01_G12, Mouse strain C57BL/6J (56 days, male) 6.1
77278977 Antisense, RP_070116_01_A08, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.