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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.0 nTPM
HPA:31.0 nTPM
GTEx:23.2 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:46.7 nTPM
Mouse:35.8 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Hippocampus
nTPM: 28.4
2529 Female, age 94, left hemisphere 29.7
1911 Female, age 85, right hemisphere 29.0
2621 Female, age 67, right hemisphere 29.0
2148 Female, age 91, left hemisphere 28.8
1855 Male, age 76, left hemisphere 27.6
1898 Male, age 80, left hemisphere 26.5
Dentate gyrus
nTPM: 28.1
1927 Female, age 91, both hemispheres 29.5
2246 Female, age 85, both hemispheres 28.6
2528 Male, age 74, both hemispheres 28.4
2531 Female, age 67, both hemispheres 28.3
2010 Male, age 76, both hemispheres 27.6
2530 Female, age 94, left hemisphere 26.1
Entorhinal gyrus
nTPM: 29.9
2764 Male, age 80, right hemisphere 32.0
1787 Male, age 76, left hemisphere 31.4
2613 Female, age 94, left hemisphere 29.9
1938 Female, age 85, left hemisphere 29.8
2117 Female, age 91, right hemisphere 28.6
2686 Male, age 75, right hemisphere 27.5
Hippocampus, CA1
nTPM: 29.6
2749 Male, age 80, left hemisphere 30.6
2045 Male, age 76, both hemispheres 30.5
2082 Female, age 91, right hemisphere 30.1
2527 Male, age 74, both hemispheres 29.4
1873 Female, age 85, both hemispheres 27.5
Hippocampus, CA2
nTPM: 27.9
2113 Female, age 91, right hemisphere 30.2
2437 Female, age 94, left hemisphere 28.7
1940 Female, age 85, left hemisphere 28.2
1892 Male, age 76, both hemispheres 27.7
2249 Male, age 74, both hemispheres 27.3
1963 Male, age 80, left hemisphere 25.3
Hippocampus, CA3
nTPM: 29.8
2436 Male, age 74, both hemispheres 32.1
2620 Female, age 94, left hemisphere 31.1
2137 Male, age 80, left hemisphere 31.0
2861 Female, age 67, both hemispheres 28.9
1891 Female, age 85, both hemispheres 28.1
1867 Male, age 76, both hemispheres 27.4
Parahippocampal cortex
nTPM: 30.1
2532 Female, age 72, left hemisphere 31.8
1850 Male, age 80, both hemispheres 30.8
2018 Male, age 76, both hemispheres 30.8
2622 Female, age 67, right hemisphere 30.8
2250 Female, age 67, right hemisphere 30.3
2693 Female, age 94, both hemispheres 30.0
1933 Female, age 85, both hemispheres 29.9
1990 Female, age 91, right hemisphere 29.6
2245 Female, age 91, both hemispheres 29.4
2692 Male, age 74, both hemispheres 28.1
Perirhinal gyrus
nTPM: 31.0
1794 Male, age 80, right hemisphere 32.6
1841 Female, age 85, right hemisphere 32.1
2848 Male, age 76, right hemisphere 31.1
1847 Female, age 91, left hemisphere 30.7
2521 Female, age 94, right hemisphere 28.3
Subiculum
nTPM: 28.8
2438 Female, age 94, left hemisphere 31.1
2619 Male, age 74, both hemispheres 29.9
1901 Male, age 80, both hemispheres 28.2
2042 Male, age 76, both hemispheres 28.2
1977 Female, age 85, both hemispheres 28.0
2729 Female, age 91, right hemisphere 27.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.2
Samples: 197

Max nTPM: 38.7
Min nTPM: 12.9
Std nTPM: 3.8
Median nTPM: 23.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 38.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 32.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 32.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 31.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 31.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 30.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 30.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 30.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 30.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 30.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 29.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.3
FF:10169-103B7 60 years, female 51.2
FF:10153-102I9 76 years, female 45.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 46.7
Samples: 4

Max nTPM: 54.5
Min nTPM: 42.6
Sample A Female 54.5
Sample B Female 47.1
Sample C Male 42.7
Sample D Male 42.6
Entorhinal cortex
nTPM: 45.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 42.4
Sample A Female 51.7
Sample B Female 42.4
Sample C Male 42.8
Sample D Male 44.1
Subiculum
nTPM: 38.8
Samples: 4

Max nTPM: 46.1
Min nTPM: 36.1
Sample A Female 46.1
Sample B Female 36.1
Sample C Male 36.3
Sample D Male 36.6
Ventral hippocampus
nTPM: 43.6
Samples: 4

Max nTPM: 52.4
Min nTPM: 34.4
Sample A Female 39.7
Sample B Female 34.4
Sample C Male 47.9
Sample D Male 52.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.7
Samples: 4

Max nTPM: 33.0
Min nTPM: 30.3
Sample A Male 30.3
Sample B Male 33.0
Sample C Female 31.6
Sample D Female 32.0
Hippocampal formation
nTPM: 35.8
Samples: 4

Max nTPM: 37.2
Min nTPM: 34.1
Sample A Male 34.1
Sample B Male 35.8
Sample C Female 37.2
Sample D Female 36.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
112197140 Antisense, RP_110421_01_D10, Mouse strain C57BL/6J (56 days, male) 3.2
1901 Antisense, RP_040428_01_E03, Mouse strain C57BL/6J (56 days, male) 0.3

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