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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.9 nTPM
HPA:0.9 nTPM
GTEx:1.2 nTPM
FANTOM5:13.0 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:2.1 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020989
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
2846 Female, age 79, unknown 1.3
1854 Male, age 80, left hemisphere 0.7
1781 Male, age 74, unknown 0.6
1857 Female, age 85, left hemisphere 0.6
2289 Male, age 61, right hemisphere 0.6
2288 Male, age 75, left hemisphere 0.4
2290 Female, age 72, unknown 0.2
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.6
2491 Male, age 75, both hemispheres 1.4
2645 Female, age 72, unknown 1.0
2284 Female, age 91, both hemispheres 0.9
2198 Male, age 80, both hemispheres 0.7
2292 Female, age 85, both hemispheres 0.6
2568 Male, age 61, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.3
2196 Female, age 79, unknown 0.2
1956 Male, age 74, unknown 0.0
Globus pallidus, externus
nTPM: 0.2
1996 Male, age 80, right hemisphere 0.3
2772 Female, age 79, unknown 0.3
2395 Male, age 75, both hemispheres 0.1
2567 Female, age 72, unknown 0.1
2646 Male, age 61, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.2
1818 Male, age 74, unknown 0.6
2287 Male, age 75, right hemisphere 0.5
2111 Female, age 85, right hemisphere 0.4
2566 Female, age 72, unknown 0.2
2037 Male, age 80, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.6
2391 Female, age 94, left hemisphere 1.0
1783 Male, age 74, unknown 0.9
1856 Female, age 91, right hemisphere 0.7
1806 Female, age 85, left hemisphere 0.6
2286 Male, age 75, left hemisphere 0.6
2698 Female, age 72, unknown 0.5
2732 Male, age 80, right hemisphere 0.4
2824 Male, age 61, right hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 0.4
2393 Male, age 80, right hemisphere 0.8
2821 Male, age 75, both hemispheres 0.6
2484 Female, age 94, left hemisphere 0.3
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.8
2029 Male, age 61, right hemisphere 1.6
2775 Male, age 80, right hemisphere 1.0
1979 Male, age 74, unknown 0.9
1812 Female, age 91, both hemispheres 0.3
2195 Female, age 85, both hemispheres 0.2
Olfactory tubercle
nTPM: 0.9
1998 Female, age 91, both hemispheres 1.8
1846 Male, age 80, right hemisphere 0.8
2487 Female, age 94, left hemisphere 0.6
2856 Male, age 75, right hemisphere 0.4
Putamen
nTPM: 0.7
2482 Female, age 94, left hemisphere 1.1
2489 Female, age 72, unknown 0.8
1838 Male, age 80, right hemisphere 0.7
2466 Female, age 79, unknown 0.7
1829 Male, age 74, unknown 0.6
1937 Female, age 91, right hemisphere 0.5
2647 Male, age 75, left hemisphere 0.5
Septal nuclei
nTPM: 0.7
2009 Female, age 91, both hemispheres 1.2
2031 Female, age 72, unknown 0.8
2629 Female, age 94, right hemisphere 0.8
2059 Female, age 85, both hemispheres 0.7
2394 Male, age 61, left hemisphere 0.7
1960 Male, age 74, unknown 0.4
2199 Male, age 80, right hemisphere 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.2
Samples: 246

Max nTPM: 11.6
Min nTPM: 0.0
Std nTPM: 0.7
Median nTPM: 1.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 11.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 2.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.1
Samples: 246

Max nTPM: 9.1
Min nTPM: 0.1
Std nTPM: 0.6
Median nTPM: 1.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 9.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 2.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 1.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 1.8
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1.8
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 1.7
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1.7
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1.6
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1.6
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Brain - Putamen (basal ganglia)
Average nTPM: 1.1
Samples: 205

Max nTPM: 7.7
Min nTPM: 0.2
Std nTPM: 0.6
Median nTPM: 1.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 7.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 6.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 2.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 2.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 1.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.0
FF:10164-103B2 76 years, female 13.0
Globus pallidus
Scaled Tags Per Million: 9.4
FF:10175-103C4 60 years, female 9.4
FF:10161-103A8 76 years, female 9.3
Nucleus accumbens
Scaled Tags Per Million: 12.1
FF:10037-101F1 23-56 years, mixed 12.1
Putamen
Scaled Tags Per Million: 7.8
FF:10176-103C5 60 years, female 7.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.1
Pig sample Sample description nTPM
Caudate
nTPM: 6.6
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 7.2
Sample C Male 6.6
Sample D Male 6.9
Putamen
nTPM: 7.1
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 7.5
Sample C Male 7.7
Sample D Male 7.0
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.2
Sample A Female 6.0
Sample B Female 6.5
Sample C Male 5.2
Sample D Male 6.0
Ventral pallidum
nTPM: 6.2
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.7
Sample A Female 6.4
Sample B Female 6.6
Sample C Male 5.7
Sample D Male 6.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.1
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.5
Sample A Male 2.4
Sample B Male 2.2
Sample C Female 2.4
Sample D Female 1.5
Septum
nTPM: 1.3
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.2
Sample A Male 1.4
Sample B Male 1.3
Sample C Female 1.2
Sample D Female 1.4
Ventral forebrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.7
Sample A Male 2.1
Sample B Male 1.8
Sample C Female 1.7
Sample D Female 1.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
71656705 Antisense, RP_050927_04_B09, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.3
71656705 Antisense, RP_050927_04_B09, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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